Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FPL17_RS11105 Genome accession   NZ_CP041970
Coordinates   2430909..2431337 (-) Length   142 a.a.
NCBI ID   WP_159885068.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2425909..2436337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS11075 (FPL17_11215) - 2425994..2426263 (-) 270 WP_004804467.1 HPr family phosphocarrier protein -
  FPL17_RS11080 (FPL17_11220) rapZ 2426260..2427111 (-) 852 WP_005146575.1 RNase adapter RapZ -
  FPL17_RS11085 (FPL17_11225) panC 2427132..2427977 (-) 846 WP_005184785.1 pantoate--beta-alanine ligase -
  FPL17_RS11090 (FPL17_11230) panB 2427981..2428790 (-) 810 WP_005184787.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FPL17_RS11095 (FPL17_11235) folK 2428830..2429318 (-) 489 WP_159885064.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FPL17_RS11100 (FPL17_11240) pcnB 2429315..2430769 (-) 1455 WP_159885066.1 polynucleotide adenylyltransferase PcnB -
  FPL17_RS11105 (FPL17_11245) comEA 2430909..2431337 (-) 429 WP_159885068.1 ComEA family DNA-binding protein Machinery gene
  FPL17_RS11110 (FPL17_11250) mazG 2431306..2432112 (-) 807 WP_159885070.1 nucleoside triphosphate pyrophosphohydrolase -
  FPL17_RS11115 (FPL17_11255) - 2432214..2432987 (+) 774 WP_159885072.1 SDR family oxidoreductase -
  FPL17_RS11120 (FPL17_11260) - 2433038..2433427 (-) 390 WP_005184800.1 hypothetical protein -
  FPL17_RS11125 (FPL17_11265) - 2433460..2435766 (-) 2307 WP_005184802.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16178.58 Da        Isoelectric Point: 10.5127

>NTDB_id=375076 FPL17_RS11105 WP_159885068.1 2430909..2431337(-) (comEA) [Acinetobacter dispersus strain NCCP 16014]
MTLPQLSSKHKIFLVMLLCVGCISHLNAQQFDQSYQQWKAQQQVRDQQLANQQNNNYYLSRPTQQQNSKQVSSSVNIQGG
KISLNQTNLQQLQTLSGVGEKKAQAIMEYRQKNGAFKSIDELMNIKGIGPKLLEKNRARLML

Nucleotide


Download         Length: 429 bp        

>NTDB_id=375076 FPL17_RS11105 WP_159885068.1 2430909..2431337(-) (comEA) [Acinetobacter dispersus strain NCCP 16014]
ATGACATTGCCGCAGTTAAGCAGCAAACATAAGATCTTTTTAGTGATGCTTTTGTGCGTGGGGTGTATTTCACATCTCAA
CGCACAGCAGTTTGATCAATCTTATCAGCAATGGAAAGCACAGCAGCAGGTACGTGATCAGCAATTGGCGAATCAGCAGA
ACAATAACTATTATTTATCTCGCCCTACACAACAGCAAAATTCTAAACAAGTTTCATCATCTGTAAATATTCAAGGCGGT
AAAATTAGCTTAAACCAAACGAACTTACAGCAATTACAGACACTCAGTGGCGTTGGTGAAAAAAAGGCGCAAGCGATTAT
GGAATATCGCCAAAAAAATGGTGCTTTTAAAAGTATAGATGAGTTGATGAACATAAAAGGTATTGGACCAAAACTGCTTG
AGAAAAACAGAGCAAGGCTCATGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

51.111

95.07

0.486
  comEA Acinetobacter baumannii D1279779

48.889

95.07

0.465
  comEA Acinetobacter baylyi ADP1

44.275

92.254

0.408

Multiple sequence alignment