Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FPL13_RS03765 Genome accession   NZ_CP041968
Coordinates   762497..763186 (+) Length   229 a.a.
NCBI ID   WP_049513304.1    Uniprot ID   A0A7L8W4W3
Organism   Streptococcus sp. KS 6     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 757497..768186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL13_RS03745 (FPL13_03790) - 758168..759724 (-) 1557 WP_049513383.1 ClC family H(+)/Cl(-) exchange transporter -
  FPL13_RS03750 (FPL13_03795) - 759952..760680 (-) 729 WP_049513302.1 ABC transporter permease -
  FPL13_RS03755 (FPL13_03800) - 760677..761417 (-) 741 WP_003024586.1 ABC transporter permease -
  FPL13_RS03760 (FPL13_03805) - 761417..762325 (-) 909 WP_049513303.1 ABC transporter ATP-binding protein -
  FPL13_RS03765 (FPL13_03810) scnR 762497..763186 (+) 690 WP_049513304.1 response regulator transcription factor Regulator
  FPL13_RS03770 (FPL13_03815) scnK 763187..764497 (+) 1311 WP_021001669.1 sensor histidine kinase Regulator
  FPL13_RS03775 (FPL13_03820) nox 764794..766167 (-) 1374 WP_049513305.1 H2O-forming NADH oxidase -
  FPL13_RS03780 (FPL13_03825) - 766453..767382 (+) 930 WP_318630706.1 FAD:protein FMN transferase -
  FPL13_RS03785 (FPL13_03830) - 767402..768010 (+) 609 WP_049513309.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26297.59 Da        Isoelectric Point: 6.5039

>NTDB_id=375005 FPL13_RS03765 WP_049513304.1 762497..763186(+) (scnR) [Streptococcus sp. KS 6]
MNYKEKKILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPTCQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=375005 FPL13_RS03765 WP_049513304.1 762497..763186(+) (scnR) [Streptococcus sp. KS 6]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAATCCAGAAATTTTAGAAATGGTGCAAGAATCATTGAACAT
TGCTGGTTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGTTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTACTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTTACTTTTGACCAACTCTTAGAAAAAGTCTGGGGCTTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATCGAAGCCAATCCATCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W4W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

88.21

100

0.882
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376

Multiple sequence alignment