Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSEL_RS00235 Genome accession   NC_014219
Coordinates   50546..50833 (-) Length   95 a.a.
NCBI ID   WP_013171023.1    Uniprot ID   D6XV35
Organism   [Bacillus] selenitireducens MLS10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45546..55833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS00200 (Bsel_0035) - 45933..46262 (+) 330 WP_013171016.1 cyclic-di-AMP receptor -
  BSEL_RS00205 (Bsel_0036) holB 46299..47291 (+) 993 WP_013171017.1 DNA polymerase III subunit delta' -
  BSEL_RS00210 (Bsel_0037) - 47297..48124 (+) 828 WP_013171018.1 stage 0 sporulation family protein -
  BSEL_RS00215 (Bsel_0038) yabA 48176..48508 (+) 333 WP_408643028.1 DNA replication initiation control protein YabA -
  BSEL_RS00220 (Bsel_0039) - 48580..49305 (+) 726 WP_013171020.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSEL_RS00225 (Bsel_0040) - 49292..49573 (+) 282 WP_013171021.1 GIY-YIG nuclease family protein -
  BSEL_RS00230 (Bsel_0041) rsmI 49570..50472 (+) 903 WP_013171022.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSEL_RS00235 (Bsel_0042) abrB 50546..50833 (-) 288 WP_013171023.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSEL_RS00240 (Bsel_0043) metG 51640..53628 (+) 1989 WP_013171024.1 methionine--tRNA ligase -
  BSEL_RS00245 (Bsel_0044) - 53672..54457 (+) 786 WP_013171025.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10679.38 Da        Isoelectric Point: 4.5748

>NTDB_id=37471 BSEL_RS00235 WP_013171023.1 50546..50833(-) (abrB) [[Bacillus] selenitireducens MLS10]
MKSTGIVRKVDELGRVVIPIELRRTLDIAEKDALEIYVDDERIILQKYKPNMTCQVTGEVSDDNLSIGNGKIILSPMGAK
EIMKELEDYVAKNEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=37471 BSEL_RS00235 WP_013171023.1 50546..50833(-) (abrB) [[Bacillus] selenitireducens MLS10]
ATGAAATCAACTGGTATTGTTAGAAAAGTGGACGAACTTGGACGCGTGGTTATCCCGATTGAACTGCGTCGTACCCTGGA
TATTGCCGAAAAGGATGCGTTGGAGATCTACGTGGACGATGAGCGCATTATCCTGCAGAAATACAAGCCGAACATGACGT
GTCAGGTAACGGGCGAAGTGTCCGATGACAACCTGTCCATCGGAAATGGCAAAATCATTCTCAGCCCGATGGGTGCAAAA
GAAATTATGAAAGAACTCGAAGATTACGTAGCGAAGAACGAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6XV35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

79.545

92.632

0.737

Multiple sequence alignment