Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DAAHT2_RS00400 Genome accession   NC_014216
Coordinates   89285..89692 (-) Length   135 a.a.
NCBI ID   WP_013162317.1    Uniprot ID   D6Z5C9
Organism   Desulfurivibrio alkaliphilus AHT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 84285..94692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAAHT2_RS13595 (DaAHT2_0069) - 85438..86187 (-) 750 WP_013162313.1 DUF3299 domain-containing protein -
  DAAHT2_RS00385 (DaAHT2_0070) - 86371..87630 (-) 1260 WP_013162314.1 ABC transporter permease -
  DAAHT2_RS00390 (DaAHT2_0071) - 87618..88364 (-) 747 WP_013162315.1 ABC transporter ATP-binding protein -
  DAAHT2_RS00395 (DaAHT2_0072) - 88395..89150 (-) 756 WP_013162316.1 DUF2796 domain-containing protein -
  DAAHT2_RS00400 (DaAHT2_0073) ssb 89285..89692 (-) 408 WP_013162317.1 single-stranded DNA-binding protein Machinery gene
  DAAHT2_RS00405 (DaAHT2_0074) - 89925..91106 (-) 1182 WP_013162318.1 spore photoproduct lyase family protein -
  DAAHT2_RS00410 (DaAHT2_0075) trxB 91103..92080 (-) 978 WP_167319349.1 thioredoxin-disulfide reductase -
  DAAHT2_RS00415 (DaAHT2_0076) corA 92136..93245 (-) 1110 WP_013162320.1 magnesium/cobalt transporter CorA -
  DAAHT2_RS00420 (DaAHT2_0077) - 93575..94411 (+) 837 WP_013162321.1 ion transporter -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15261.20 Da        Isoelectric Point: 5.0186

>NTDB_id=37446 DAAHT2_RS00400 WP_013162317.1 89285..89692(-) (ssb) [Desulfurivibrio alkaliphilus AHT]
MINKVILIGNLGADPEVRYSQSGDAVTTFRIATTEVWKKQDGSKEELTEWHRIVTFKRLAEICGEYLSKGSRVYIEGRIQ
TRKWQDKDGNDRYTTEIVAREMKMLSPRGAGGDSGNQFMDEPPPPEPPIGDDVPF

Nucleotide


Download         Length: 408 bp        

>NTDB_id=37446 DAAHT2_RS00400 WP_013162317.1 89285..89692(-) (ssb) [Desulfurivibrio alkaliphilus AHT]
ATGATCAATAAAGTCATTCTTATCGGCAACCTGGGCGCCGATCCGGAGGTGCGCTACTCGCAGAGCGGCGACGCCGTTAC
CACCTTCCGTATCGCCACCACCGAAGTGTGGAAAAAACAAGACGGCAGCAAAGAGGAACTGACCGAATGGCACCGGATCG
TAACCTTCAAGCGACTGGCCGAGATCTGCGGCGAGTACCTGTCCAAGGGTTCCCGGGTGTACATTGAAGGCCGGATCCAG
ACCCGCAAATGGCAGGACAAGGACGGCAACGACCGCTACACCACGGAAATCGTCGCCCGGGAAATGAAAATGCTCTCACC
CCGCGGGGCCGGGGGAGATTCCGGCAACCAGTTTATGGATGAACCGCCACCGCCTGAACCGCCCATCGGCGACGATGTGC
CTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6Z5C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.759

85.926

0.496
  ssb Glaesserella parasuis strain SC1401

56.78

87.407

0.496
  ssb Neisseria gonorrhoeae MS11

55

88.889

0.489
  ssb Neisseria meningitidis MC58

57.944

79.259

0.459

Multiple sequence alignment