Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FOV14_RS11800 Genome accession   NZ_CP041784
Coordinates   2472747..2473082 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain IM1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2467747..2478082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS11780 (FOV14_11855) gcvT 2468358..2469458 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  FOV14_RS11785 (FOV14_11860) - 2469881..2471551 (+) 1671 WP_003153107.1 SNF2-related protein -
  FOV14_RS11790 (FOV14_11865) - 2471569..2472363 (+) 795 WP_240679748.1 YqhG family protein -
  FOV14_RS11795 (FOV14_11870) sinI 2472540..2472713 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  FOV14_RS11800 (FOV14_11875) sinR 2472747..2473082 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  FOV14_RS11805 (FOV14_11880) - 2473130..2473915 (-) 786 WP_003153102.1 TasA family protein -
  FOV14_RS11810 (FOV14_11885) - 2473979..2474563 (-) 585 WP_240679749.1 signal peptidase I -
  FOV14_RS11815 (FOV14_11890) tapA 2474535..2475206 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  FOV14_RS11820 (FOV14_11895) - 2475465..2475794 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  FOV14_RS11825 (FOV14_11900) - 2475834..2476013 (-) 180 WP_003153093.1 YqzE family protein -
  FOV14_RS11830 (FOV14_11905) comGG 2476070..2476447 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  FOV14_RS11835 (FOV14_11910) comGF 2476448..2476948 (-) 501 WP_235570156.1 competence type IV pilus minor pilin ComGF -
  FOV14_RS11840 (FOV14_11915) comGE 2476857..2477171 (-) 315 WP_057080485.1 competence type IV pilus minor pilin ComGE Machinery gene
  FOV14_RS11845 (FOV14_11920) comGD 2477155..2477592 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOV14_RS11850 (FOV14_11925) comGC 2477582..2477848 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=374300 FOV14_RS11800 WP_003153104.1 2472747..2473082(+) (sinR) [Bacillus velezensis strain IM1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=374300 FOV14_RS11800 WP_003153104.1 2472747..2473082(+) (sinR) [Bacillus velezensis strain IM1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment