Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M301_RS12810 Genome accession   NC_014207
Coordinates   2785416..2785931 (-) Length   171 a.a.
NCBI ID   WP_013149210.1    Uniprot ID   D7DNA2
Organism   Methylotenera versatilis 301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2780416..2790931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M301_RS12785 (M301_2537) - 2781100..2781492 (-) 393 WP_013149204.1 VOC family protein -
  M301_RS12790 (M301_2539) - 2781671..2782198 (-) 528 WP_013149206.1 adenine phosphoribosyltransferase -
  M301_RS12795 (M301_2540) aspS 2782352..2784136 (-) 1785 WP_013149207.1 aspartate--tRNA ligase -
  M301_RS12800 (M301_2541) - 2784238..2784843 (-) 606 WP_013149208.1 DUF502 domain-containing protein -
  M301_RS12805 (M301_2542) - 2784866..2785150 (-) 285 WP_013149209.1 FmdB family zinc ribbon protein -
  M301_RS12810 (M301_2543) ssb 2785416..2785931 (-) 516 WP_013149210.1 single-stranded DNA-binding protein Machinery gene
  M301_RS12815 (M301_2544) - 2785934..2787319 (-) 1386 WP_013149211.1 MFS transporter -
  M301_RS12820 (M301_2545) uvrA 2787562..2790375 (+) 2814 WP_013149212.1 excinuclease ABC subunit UvrA -
  M301_RS12825 (M301_2546) - 2790394..2790618 (+) 225 WP_013149213.1 DUF2798 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18688.58 Da        Isoelectric Point: 4.8419

>NTDB_id=37397 M301_RS12810 WP_013149210.1 2785416..2785931(-) (ssb) [Methylotenera versatilis 301]
MASVNKVILVGNLGRDPEVRFMPNGEAVCNFSIATTDSWKDKSGAKQERTEWHNIVMYRKLAEIAGEYLKKGRPVYVEGR
LQTRKWQTKEGQDRYTTEIIADQMQMLGGRDGAGSNASYDGGMDQSSGSSDYDQVPSSANQSSAKQAPAQSTAKAATSGS
GFDDFEDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=37397 M301_RS12810 WP_013149210.1 2785416..2785931(-) (ssb) [Methylotenera versatilis 301]
ATGGCATCAGTCAATAAAGTCATATTAGTTGGTAATTTAGGCCGTGATCCTGAAGTAAGATTCATGCCGAATGGCGAAGC
TGTGTGTAACTTCAGCATTGCGACTACCGATAGCTGGAAAGATAAATCTGGCGCAAAGCAAGAGCGCACTGAGTGGCACA
ATATTGTGATGTACCGCAAGCTTGCGGAAATCGCAGGGGAATACCTTAAAAAAGGTCGTCCAGTTTACGTTGAAGGCCGT
TTGCAAACGCGTAAATGGCAGACTAAAGAAGGTCAAGATCGCTACACGACAGAAATAATTGCAGACCAAATGCAAATGCT
AGGCGGACGTGATGGTGCCGGTTCAAATGCTAGCTACGACGGTGGTATGGATCAAAGTAGTGGCAGCAGCGATTACGATC
AAGTGCCATCAAGTGCTAATCAATCATCAGCAAAACAAGCGCCAGCGCAGTCAACTGCAAAAGCTGCTACTAGCGGTTCG
GGTTTTGATGATTTTGAAGATGACATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7DNA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.538
  ssb Neisseria meningitidis MC58

52.601

100

0.532
  ssb Neisseria gonorrhoeae MS11

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.526

Multiple sequence alignment