Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FO446_RS12265 Genome accession   NZ_CP041767
Coordinates   2482360..2484084 (+) Length   574 a.a.
NCBI ID   WP_173609596.1    Uniprot ID   -
Organism   Brevibacillus brevis strain B011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2477360..2489084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO446_RS12245 (FO446_12320) dxs 2478202..2480088 (+) 1887 WP_173609599.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FO446_RS12250 (FO446_12325) - 2480085..2480903 (+) 819 WP_173609598.1 TlyA family RNA methyltransferase -
  FO446_RS12255 (FO446_12330) - 2481031..2481888 (+) 858 WP_237900748.1 NAD(+)/NADH kinase -
  FO446_RS12260 (FO446_12335) ahrC 2481894..2482343 (+) 450 WP_007720787.1 transcriptional regulator AhrC/ArgR -
  FO446_RS12265 (FO446_12340) recN 2482360..2484084 (+) 1725 WP_173609596.1 DNA repair protein RecN Machinery gene
  FO446_RS12270 (FO446_12345) spoIVB 2484327..2485661 (+) 1335 WP_173609595.1 SpoIVB peptidase -
  FO446_RS12275 (FO446_12350) spo0A 2485922..2486710 (+) 789 WP_007720793.1 sporulation transcription factor Spo0A -
  FO446_RS12280 (FO446_12360) - 2487024..2487467 (+) 444 WP_237900750.1 hypothetical protein -
  FO446_RS12285 (FO446_12365) - 2487725..2488162 (-) 438 WP_237900752.1 hypothetical protein -
  FO446_RS12290 (FO446_12370) - 2488258..2488677 (+) 420 WP_237900754.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64684.61 Da        Isoelectric Point: 4.7217

>NTDB_id=373962 FO446_RS12265 WP_173609596.1 2482360..2484084(+) (recN) [Brevibacillus brevis strain B011]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEPRAEVEGLFELPPGHPGLDVC
KNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLRELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAK
QEYGTLYTAYRKTKQDLERMARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG
DQKGMDWLGHAMGELERGVNYEEQLVPILEMVQSAYYQIEDVVHNLRQLSYQMDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATIQDELDDMHHYEDRLQQVEKQLQELAADLAVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVR
QTPDEDGVEIDGIKRFVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDERVSELARMLSGAEVTAKTEEHA
REMILLGRERKTVS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=373962 FO446_RS12265 WP_173609596.1 2482360..2484084(+) (recN) [Brevibacillus brevis strain B011]
ATGCTAGTGGAACTCTCGATCCGAAATTTTGCCATCATCAAATCAGTGACGGTCTCTTTCCAAAAAGGGTTAAACATCCT
GACAGGGGAGACTGGTGCTGGTAAATCCATCATTATCGATGCGCTAGGACTGTTGTTAGGAGGCCGGGCTTCGGCTGATT
TTGTCCGTTACGGTGAGCCTCGTGCAGAGGTGGAAGGGCTGTTTGAATTGCCGCCTGGTCACCCGGGACTTGACGTCTGT
AAGAATGTCGGCGTCCAGATTGAGCAAGACGGTATGCTTGTGGTACGCCGAGATATATCGAATCAAGGGAAAAGTATCAT
TCGAATCAATGGCCAGCTCGTAACTCTCGCTATGCTGCGTGAGTTAGGGCCATGGTTGGTTACGGTGCATGGGCAACACG
ATACGCATATGCTGATGCAGTCAGACAAGCATATCAATTGGCTGGATGCATATGGGGAAAGTGCGTTGGGAGCTGCGAAG
CAAGAATATGGAACCCTGTATACTGCGTACCGCAAGACAAAGCAAGATCTGGAGCGCATGGCACGCAATGATCGGGAGCT
GGTGCAGCGCATCGATCTTTTGCAATATCAGCTCGATGAAATTGAGTCGGCAACCCTCACGCCTGGTGAAGACGAGAAGC
TCATGCAGCAGCGGAAAAAGTGGATGAACATTGAAAAAGTTTATTCAACGATTCAAGATGCATACCGGGCTTTGCATGGT
GACCAAAAGGGCATGGATTGGTTGGGTCATGCGATGGGTGAGCTTGAGCGTGGTGTGAACTACGAAGAACAGCTCGTTCC
GATTTTGGAAATGGTCCAATCGGCATACTATCAGATAGAAGATGTGGTGCATAACCTTCGTCAATTGTCGTACCAAATGG
ATTTTGAACCGGAGCAGCTGGCAGAAGTAGAACGCCGTCTTGATCAAATCCAGTCGTTAAAACGCAAGTATGGCAAAAGT
GTAGACGATATTTTGGAGTACGCGGCAACGATTCAGGATGAATTGGATGACATGCATCACTACGAAGATCGTCTCCAGCA
GGTGGAAAAGCAATTGCAGGAGCTTGCAGCCGATTTGGCAGTGGAAGCATTGGAGTTGTCGGTTATTCGCTCCGAATGTG
CTGGAAAGCTCGCACAAGAAATCGAGCAGCAATTAAAAGAACTGCACATGGAGCGAGCTCGTTTTGCCATCGACGTCAGA
CAGACACCGGATGAAGACGGGGTAGAAATCGACGGAATCAAGCGCTTCGTAGATGCGAACGGAATGGATCAGATCGAGTT
TTTAATCTCACCTAACCCGGGTGAGCCATTGCGTCCCTTGGCGAAGATTGCTTCCGGCGGAGAGCTGTCGCGTGTCATGC
TGGCCATTAAAACGATTTTGGCGGGCACTGATCAAGTGGAGACCCTCATTTTTGATGAAGTCGACACAGGAGTAAGTGGA
AGGGCAGCTCAAGCGATAGCAGAAAAGCTCGCCCGGGTCGCTGGACAGCGCCAAGTCCTGTGCATTACGCACTTGCCACA
GGTCGCATCCATGGCAGACGCTCATTTTCTGATCAAAAAGGAAATGAGCGAGAATGAAACGGAGACGCGGGTGAATCGTC
TGTCTGATGATGAACGGGTATCAGAGCTGGCTCGTATGCTAAGCGGGGCAGAGGTAACAGCAAAAACAGAAGAACATGCA
CGCGAGATGATCCTTCTCGGCCGTGAACGAAAGACTGTCAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.611

100

0.488

Multiple sequence alignment