Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GC56T3_RS17985 Genome accession   NC_014206
Coordinates   3634523..3635017 (-) Length   164 a.a.
NCBI ID   WP_011232944.1    Uniprot ID   A0A553M4V0
Organism   Geobacillus sp. C56-T3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3629523..3640017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS17965 (GC56T3_3459) rplI 3630657..3631106 (-) 450 WP_011232941.1 50S ribosomal protein L9 -
  GC56T3_RS17970 (GC56T3_3460) - 3631103..3633079 (-) 1977 WP_013146700.1 DHH family phosphoesterase -
  GC56T3_RS17975 (GC56T3_3461) - 3633126..3634052 (-) 927 WP_013146701.1 YybS family protein -
  GC56T3_RS17980 (GC56T3_3462) rpsR 3634189..3634425 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  GC56T3_RS17985 (GC56T3_3463) ssbA 3634523..3635017 (-) 495 WP_011232944.1 single-stranded DNA-binding protein Machinery gene
  GC56T3_RS17990 (GC56T3_3464) rpsF 3635048..3635335 (-) 288 WP_011232945.1 30S ribosomal protein S6 -
  GC56T3_RS17995 (GC56T3_3465) ychF 3635550..3636650 (-) 1101 WP_013146702.1 redox-regulated ATPase YchF -
  GC56T3_RS18000 (GC56T3_3466) - 3636890..3638911 (-) 2022 WP_013146703.1 molybdopterin-dependent oxidoreductase -
  GC56T3_RS18005 (GC56T3_3467) - 3638968..3639165 (-) 198 WP_011232948.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18406.30 Da        Isoelectric Point: 4.5787

>NTDB_id=37376 GC56T3_RS17985 WP_011232944.1 3634523..3635017(-) (ssbA) [Geobacillus sp. C56-T3]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHQYPNEKGFGRIDDDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=37376 GC56T3_RS17985 WP_011232944.1 3634523..3635017(-) (ssbA) [Geobacillus sp. C56-T3]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAATGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGTGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTATGGGGATCCATTCCCATTCGGGCAAGATCAGAACCACCAAT
ATCCGAACGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553M4V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.816

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Vibrio cholerae strain A1552

35.955

100

0.39

Multiple sequence alignment