Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FO458_RS10505 Genome accession   NZ_CP041726
Coordinates   2126244..2126753 (-) Length   169 a.a.
NCBI ID   WP_002461102.1    Uniprot ID   A0A133Q7N8
Organism   Staphylococcus lugdunensis strain SL118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2111336..2128174 2126244..2126753 within 0


Gene organization within MGE regions


Location: 2111336..2128174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO458_RS10385 (FO458_10385) - 2111336..2112259 (-) 924 WP_060795407.1 ATP-binding cassette domain-containing protein -
  FO458_RS10390 (FO458_10390) - 2112350..2112583 (-) 234 Protein_2003 IS6 family transposase -
  FO458_RS10395 (FO458_10395) - 2112835..2113035 (-) 201 WP_060795409.1 hypothetical protein -
  FO458_RS10400 (FO458_10400) - 2113178..2113636 (-) 459 WP_060795411.1 GyrI-like domain-containing protein -
  FO458_RS10410 (FO458_10410) - 2114181..2114630 (+) 450 WP_060795413.1 DUF523 domain-containing protein -
  FO458_RS10415 (FO458_10415) - 2115087..2115656 (-) 570 WP_060795415.1 terminase small subunit -
  FO458_RS10420 (FO458_10420) - 2115711..2115989 (-) 279 WP_225307940.1 hypothetical protein -
  FO458_RS10425 (FO458_10425) - 2115982..2116572 (-) 591 WP_060795417.1 hypothetical protein -
  FO458_RS10430 (FO458_10430) - 2116587..2117339 (-) 753 WP_225307941.1 hypothetical protein -
  FO458_RS10435 (FO458_10435) - 2117349..2117687 (-) 339 WP_060795419.1 hypothetical protein -
  FO458_RS10440 (FO458_10440) - 2118059..2118448 (-) 390 WP_060795421.1 hypothetical protein -
  FO458_RS10445 (FO458_10445) - 2118463..2118975 (-) 513 WP_060795423.1 hypothetical protein -
  FO458_RS10450 (FO458_10450) - 2119290..2120999 (-) 1710 WP_060795425.1 DUF927 domain-containing protein -
  FO458_RS10455 (FO458_10455) - 2121013..2121867 (-) 855 WP_060795426.1 primase alpha helix C-terminal domain-containing protein -
  FO458_RS10460 (FO458_10460) - 2121960..2122265 (-) 306 WP_060795428.1 hypothetical protein -
  FO458_RS10465 (FO458_10465) - 2122252..2122431 (-) 180 WP_060795430.1 hypothetical protein -
  FO458_RS10470 (FO458_10470) - 2122442..2122645 (-) 204 WP_060795468.1 hypothetical protein -
  FO458_RS10475 (FO458_10475) - 2122660..2122932 (-) 273 WP_060795432.1 hypothetical protein -
  FO458_RS10480 (FO458_10480) - 2122936..2123097 (-) 162 WP_060795434.1 helix-turn-helix domain-containing protein -
  FO458_RS10485 (FO458_10485) - 2123247..2123855 (+) 609 WP_060795436.1 helix-turn-helix domain-containing protein -
  FO458_RS10490 (FO458_10490) - 2123911..2124525 (+) 615 WP_060795438.1 hypothetical protein -
  FO458_RS10495 (FO458_10495) - 2124564..2125784 (+) 1221 WP_150908454.1 site-specific integrase -
  FO458_RS10500 (FO458_10500) rpsR 2125955..2126197 (-) 243 WP_002461103.1 30S ribosomal protein S18 -
  FO458_RS10505 (FO458_10505) ssbA 2126244..2126753 (-) 510 WP_002461102.1 single-stranded DNA-binding protein Machinery gene
  FO458_RS10510 (FO458_10510) rpsF 2126775..2127071 (-) 297 WP_002461101.1 30S ribosomal protein S6 -
  FO458_RS10515 (FO458_10515) - 2127389..2128174 (+) 786 WP_002479241.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18747.34 Da        Isoelectric Point: 4.9366

>NTDB_id=373532 FO458_RS10505 WP_002461102.1 2126244..2126753(-) (ssbA) [Staphylococcus lugdunensis strain SL118]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=373532 FO458_RS10505 WP_002461102.1 2126244..2126753(-) (ssbA) [Staphylococcus lugdunensis strain SL118]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133Q7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.896

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.722

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment