Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FO454_RS08025 | Genome accession | NZ_CP041722 |
| Coordinates | 1663504..1664478 (+) | Length | 324 a.a. |
| NCBI ID | WP_002478129.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SL13 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1658504..1669478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO454_RS07990 (FO454_07990) | rpmG | 1658928..1659077 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| FO454_RS07995 (FO454_07995) | - | 1659327..1659863 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| FO454_RS08000 (FO454_08000) | - | 1659880..1661337 (+) | 1458 | WP_002478127.1 | rhomboid family protein | - |
| FO454_RS08005 (FO454_08005) | - | 1661321..1661524 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| FO454_RS08010 (FO454_08010) | - | 1661521..1662507 (+) | 987 | WP_002478128.1 | ROK family glucokinase | - |
| FO454_RS08015 (FO454_08015) | - | 1662507..1662830 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| FO454_RS08020 (FO454_08020) | - | 1662834..1663457 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| FO454_RS08025 (FO454_08025) | comGA | 1663504..1664478 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FO454_RS08030 (FO454_08030) | comGB | 1664450..1665514 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| FO454_RS08035 (FO454_08035) | comGC | 1665529..1665843 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FO454_RS08040 (FO454_08040) | comGD | 1665776..1666270 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| FO454_RS08045 (FO454_08045) | - | 1666257..1666550 (+) | 294 | WP_002478131.1 | hypothetical protein | - |
| FO454_RS13425 (FO454_08050) | - | 1666612..1666971 (+) | 360 | WP_002478132.1 | competence type IV pilus minor pilin ComGF | - |
| FO454_RS08060 (FO454_08060) | - | 1667125..1667643 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| FO454_RS08065 (FO454_08065) | gcvT | 1667813..1668904 (+) | 1092 | WP_002478133.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36932.76 Da Isoelectric Point: 7.8896
>NTDB_id=373395 FO454_RS08025 WP_002478129.1 1663504..1664478(+) (comGA) [Staphylococcus lugdunensis strain SL13]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=373395 FO454_RS08025 WP_002478129.1 1663504..1664478(+) (comGA) [Staphylococcus lugdunensis strain SL13]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
71.207 |
99.691 |
0.71 |
| comGA | Staphylococcus aureus N315 |
71.207 |
99.691 |
0.71 |