Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE249_RS04900 Genome accession   NZ_CP041716
Coordinates   1050808..1051296 (-) Length   162 a.a.
NCBI ID   WP_013640502.1    Uniprot ID   F0J0U4
Organism   Acidiphilium multivorum strain JZ-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1045808..1056296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE249_RS04890 (FE249_04895) - 1046491..1047888 (+) 1398 WP_007424570.1 sigma-54-dependent transcriptional regulator -
  FE249_RS04895 (FE249_04900) - 1048080..1050491 (+) 2412 WP_231295255.1 TonB-dependent receptor -
  FE249_RS04900 (FE249_04905) ssb 1050808..1051296 (-) 489 WP_013640502.1 single-stranded DNA-binding protein Machinery gene
  FE249_RS04905 (FE249_04910) cydB 1051422..1052447 (-) 1026 WP_013640503.1 cytochrome d ubiquinol oxidase subunit II -
  FE249_RS04910 (FE249_04915) - 1052453..1053871 (-) 1419 WP_012039768.1 cytochrome ubiquinol oxidase subunit I -
  FE249_RS04915 (FE249_04920) - 1053868..1054509 (-) 642 WP_012039769.1 GbsR/MarR family transcriptional regulator -
  FE249_RS04920 (FE249_04925) - 1054576..1055487 (-) 912 WP_013640506.1 bestrophin family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17458.68 Da        Isoelectric Point: 7.0234

>NTDB_id=373366 FE249_RS04900 WP_013640502.1 1050808..1051296(-) (ssb) [Acidiphilium multivorum strain JZ-6]
MAGSVNKVILVGNLGRDPEMRTTQSGMKIVNLAVATSETWNDKMSGERQERTEWHRVVIMNDRLADVAERFLKKGSKIYL
EGKLQTRKWTDQSGQEKYTTEIMLGRIGAELVLLDRAGAGAGGDDMPRPASRPSGGGGGAPRAGGWDAGRAGGGELDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=373366 FE249_RS04900 WP_013640502.1 1050808..1051296(-) (ssb) [Acidiphilium multivorum strain JZ-6]
ATGGCGGGTAGTGTGAACAAGGTGATCCTGGTTGGAAATCTCGGGCGGGATCCTGAAATGCGGACGACCCAGTCCGGCAT
GAAGATCGTCAATCTCGCGGTCGCGACCTCGGAAACCTGGAACGACAAGATGAGCGGCGAGCGGCAGGAGCGCACCGAGT
GGCACCGCGTCGTCATCATGAACGACCGGCTGGCCGACGTGGCGGAGCGCTTCCTGAAGAAGGGCTCGAAGATCTATCTC
GAGGGCAAGTTGCAGACCCGCAAATGGACCGACCAGTCGGGCCAGGAGAAATACACCACCGAAATCATGTTGGGCCGGAT
CGGCGCCGAGCTGGTGCTGCTCGACCGTGCTGGCGCCGGGGCGGGCGGTGACGACATGCCCCGCCCGGCATCGCGGCCCT
CCGGTGGCGGCGGCGGTGCGCCGCGTGCCGGCGGATGGGATGCCGGGCGAGCCGGCGGCGGCGAACTCGACGACGAAATT
CCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0J0U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.98

93.21

0.494
  ssb Vibrio cholerae strain A1552

44.509

100

0.475
  ssb Neisseria gonorrhoeae MS11

38.889

100

0.432
  ssb Neisseria meningitidis MC58

37.43

100

0.414

Multiple sequence alignment