Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6M86_RS07145 Genome accession   NZ_CP049216
Coordinates   1451288..1451863 (+) Length   191 a.a.
NCBI ID   WP_003515262.1    Uniprot ID   A0A1B9V2D8
Organism   Agrobacterium tumefaciens strain Q15/94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1446288..1456863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M86_RS07135 (G6M86_07130) - 1447245..1448045 (-) 801 WP_065702507.1 DUF72 domain-containing protein -
  G6M86_RS07140 (G6M86_07135) uvrA 1448101..1451022 (-) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  G6M86_RS07145 (G6M86_07140) ssb 1451288..1451863 (+) 576 WP_003515262.1 single-stranded DNA-binding protein Machinery gene
  G6M86_RS07150 (G6M86_07145) - 1451929..1453077 (-) 1149 WP_065702508.1 HPP family protein -
  G6M86_RS07155 (G6M86_07150) - 1453201..1453830 (-) 630 WP_065702509.1 MarC family protein -
  G6M86_RS07160 (G6M86_07155) gyrA 1454048..1456840 (+) 2793 WP_025593447.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20327.24 Da        Isoelectric Point: 4.7391

>NTDB_id=373323 G6M86_RS07145 WP_003515262.1 1451288..1451863(+) (ssb) [Agrobacterium tumefaciens strain Q15/94]
MQLPVTMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGGSRSGGDIGGGDYGSGGGNYGGGY
DQQPAARGGASRGGSQPSGGFSSDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=373323 G6M86_RS07145 WP_003515262.1 1451288..1451863(+) (ssb) [Agrobacterium tumefaciens strain Q15/94]
ATGCAATTGCCGGTCACGATGGCTGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGGAA
CGTTGGCGCCGATCCCGAAATTCGCCGGACGCAGGACGGCCGTCCGATCGCCAATCTGCGCATCGCCACCTCAGAGACGT
GGCGGGACCGCAACAGCGGCGAGCGCAAGGAAAAGACAGAATGGCACACGGTCGTCGTTTTCAACGAAGGCCTGTGCAAG
GTTGTCGAACAATATGTGAAAAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAC
CGGTAACGACCGTTACTCAACCGAAGTGGTACTGCAGGGCTTCAACTCCACGCTGACGATGCTCGACGGTCGCGGCGAAG
GTGGCGGCGGCAGCCGCAGCGGTGGCGACATCGGCGGTGGAGATTATGGCAGCGGCGGCGGTAACTACGGTGGCGGTTAC
GACCAGCAGCCGGCGGCCCGCGGCGGTGCCTCGCGTGGCGGCAGCCAGCCTTCCGGCGGCTTCTCCAGTGACATGGACGA
CGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9V2D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

91.099

0.476
  ssb Glaesserella parasuis strain SC1401

43.523

100

0.44
  ssb Neisseria meningitidis MC58

37.766

98.429

0.372
  ssb Neisseria gonorrhoeae MS11

37.766

98.429

0.372

Multiple sequence alignment