Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6Z93_RS21080 Genome accession   NZ_CP049204
Coordinates   4439947..4440483 (-) Length   178 a.a.
NCBI ID   WP_115185979.1    Uniprot ID   -
Organism   Escherichia coli strain PapM-32-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4434947..4445483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z93_RS21060 (G6Z93_21060) soxR 4436676..4437140 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  G6Z93_RS21065 (G6Z93_21065) soxS 4437226..4437549 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  G6Z93_RS21070 (G6Z93_21070) pdeC 4437552..4439138 (-) 1587 WP_164476814.1 c-di-GMP phosphodiesterase PdeC -
  G6Z93_RS21075 (G6Z93_21075) yjcB 4439567..4439848 (+) 282 WP_001295689.1 YjcB family protein -
  G6Z93_RS21080 (G6Z93_21080) ssb 4439947..4440483 (-) 537 WP_115185979.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G6Z93_RS21085 (G6Z93_21085) uvrA 4440738..4443560 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  G6Z93_RS21090 (G6Z93_21090) lacD 4443677..4444666 (-) 990 WP_164476815.1 tagatose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=373294 G6Z93_RS21080 WP_115185979.1 4439947..4440483(-) (ssb) [Escherichia coli strain PapM-32-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQSGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=373294 G6Z93_RS21080 WP_115185979.1 4439947..4440483(-) (ssb) [Escherichia coli strain PapM-32-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGAGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.584
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489