Detailed information NTG0373215

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: FOG69_RS17305
• Genome accession: NZ_CP041693
• Coordinates: 3324149..3324838 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain H
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3319149..3329838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOG69_RS17270 (FOG69_17270)	fliW	3319239..3319670 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
FOG69_RS17275 (FOG69_17275)	-	3319700..3320269 (-)	570	WP_014471091.1	DUF6470 family protein	-
FOG69_RS17280 (FOG69_17280)	flgL	3320361..3321278 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
FOG69_RS17285 (FOG69_17285)	flgK	3321290..3322807 (-)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
FOG69_RS17290 (FOG69_17290)	-	3322823..3323305 (-)	483	WP_013353780.1	flagellar protein FlgN	-
FOG69_RS17295 (FOG69_17295)	flgM	3323320..3323586 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
FOG69_RS17300 (FOG69_17300)	-	3323656..3324075 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
FOG69_RS17305 (FOG69_17305)	comFC	3324149..3324838 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
FOG69_RS17310 (FOG69_17310)	-	3324844..3325128 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
FOG69_RS17315 (FOG69_17315)	comFA	3325187..3326572 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
FOG69_RS17320 (FOG69_17320)	-	3326679..3327527 (-)	849	WP_013353786.1	DegV family protein	-
FOG69_RS17325 (FOG69_17325)	degU	3327624..3328313 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
FOG69_RS17330 (FOG69_17330)	degS	3328390..3329553 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=373215 FOG69_RS17305 WP_198315882.1 3324149..3324838(-) (comFC) [Bacillus amyloliquefaciens strain H]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=373215 FOG69_RS17305 WP_198315882.1 3324149..3324838(-) (comFC) [Bacillus amyloliquefaciens strain H]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362