Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VV7356_RS05035 | Genome accession | NZ_CP041683 |
| Coordinates | 1041543..1041845 (+) | Length | 100 a.a. |
| NCBI ID | WP_017788735.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 7356 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1036543..1046845
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VV7356_RS05020 (VV7356_05070) | lon | 1036557..1038908 (+) | 2352 | WP_017788737.1 | endopeptidase La | - |
| VV7356_RS05025 (VV7356_05075) | - | 1039102..1039374 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| VV7356_RS05030 (VV7356_05080) | ppiD | 1039551..1041410 (+) | 1860 | WP_026130414.1 | peptidylprolyl isomerase | - |
| VV7356_RS05035 (VV7356_05085) | comEA | 1041543..1041845 (+) | 303 | WP_017788735.1 | ComEA family DNA-binding protein | Machinery gene |
| VV7356_RS05040 (VV7356_05090) | rrtA | 1041892..1042452 (-) | 561 | WP_026130413.1 | rhombosortase | - |
| VV7356_RS05045 (VV7356_05095) | - | 1042456..1043064 (+) | 609 | WP_017788733.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VV7356_RS05050 (VV7356_05100) | - | 1043086..1044417 (-) | 1332 | WP_017788732.1 | anti-phage deoxyguanosine triphosphatase | - |
| VV7356_RS05055 (VV7356_05105) | yfbR | 1044423..1045007 (-) | 585 | WP_017788731.1 | 5'-deoxynucleotidase | - |
| VV7356_RS05060 (VV7356_05110) | - | 1045088..1046302 (-) | 1215 | WP_017420942.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10889.74 Da Isoelectric Point: 9.6577
>NTDB_id=373005 VV7356_RS05035 WP_017788735.1 1041543..1041845(+) (comEA) [Vibrio vulnificus strain 7356]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=373005 VV7356_RS05035 WP_017788735.1 1041543..1041845(+) (comEA) [Vibrio vulnificus strain 7356]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGCATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGCATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60 |
100 |
0.6 |
| comEA | Vibrio campbellii strain DS40M4 |
55 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
51.02 |
98 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
51.02 |
98 |
0.5 |