Detailed information NTG0372673

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FNC98_RS02740
• Genome accession: NZ_CP041638
• Coordinates: 627672..628571 (-)
• Length: 299 a.a.
• NCBI ID: WP_313904112.1
• Uniprot ID: -
• Organism: Thalassotalea sp. PS06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 622672..633571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNC98_RS02715 (FNC98_02715)	-	622913..623107 (-)	195	WP_409574573.1	DNA gyrase inhibitor YacG	-
FNC98_RS02720 (FNC98_02720)	-	623220..625166 (+)	1947	WP_143579820.1	LTA synthase family protein	-
FNC98_RS02725 (FNC98_02725)	-	625163..625990 (-)	828	WP_143579821.1	glycerophosphodiester phosphodiesterase family protein	-
FNC98_RS02730 (FNC98_02730)	-	626012..626758 (-)	747	WP_143579822.1	cell division protein ZapD	-
FNC98_RS02735 (FNC98_02735)	coaE	627011..627619 (-)	609	WP_143579823.1	dephospho-CoA kinase	-
FNC98_RS02740 (FNC98_02740)	pilD	627672..628571 (-)	900	WP_313904112.1	A24 family peptidase	Machinery gene
FNC98_RS02745 (FNC98_02745)	pilC	628643..629890 (-)	1248	WP_143579825.1	type II secretion system F family protein	Machinery gene
FNC98_RS02750 (FNC98_02750)	pilB	629966..631663 (-)	1698	WP_143579826.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FNC98_RS02755 (FNC98_02755)	-	631759..632181 (-)	423	WP_313904113.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FNC98_RS02760 (FNC98_02760)	nadC	632701..633567 (-)	867	WP_143579828.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33672.43 Da
• Isoelectric Point: 6.8215

>NTDB_id=372673 FNC98_RS02740 WP_313904112.1 627672..628571(-) (pilD) [Thalassotalea sp. PS06]
MFSDFITLFEQLPYVYYVAVLILGLLIGSFLNVVILRLPKMMEAEWYQECCEFLADKLSKDTQKTLKQQAPEKITLIHPA
STCPKCQHKIKPWENIPVVSWIFLRGKCSSCKTSISPRYPIIELVTGLLSLYVAYHYGVSWQALAMLLLTWCLVALTMID
FDKMILPDQITLPLIWIGLLLNLNGMFVDIEQAVLGAVAGYMSLYTIFWLFKLITGKEGMGFGDFKLVAVFGAWFGYALL
PLLILMASLVGAVIGIALMVFKNHEGSKPIPFGPYLAIAGWITALFGEDIWSWYMGLLV

Nucleotide

• Length: 900 bp

>NTDB_id=372673 FNC98_RS02740 WP_313904112.1 627672..628571(-) (pilD) [Thalassotalea sp. PS06]
TTGTTTTCCGATTTTATTACCCTGTTTGAACAATTACCTTACGTTTATTATGTCGCCGTGTTAATTCTCGGTCTACTGAT
TGGCAGTTTCCTGAATGTGGTCATTTTACGCTTACCGAAAATGATGGAAGCCGAATGGTATCAAGAATGTTGCGAGTTCC
TCGCCGACAAGCTTTCAAAAGACACCCAGAAAACGCTAAAACAACAGGCACCTGAAAAAATTACCCTTATTCACCCAGCG
TCTACCTGCCCAAAATGCCAGCATAAAATTAAACCCTGGGAGAATATTCCGGTTGTGAGCTGGATATTCCTGCGTGGCAA
ATGCTCTTCCTGCAAAACATCAATATCTCCTCGCTATCCAATCATTGAGCTGGTAACGGGATTGTTGTCTTTGTATGTCG
CTTATCACTATGGCGTATCCTGGCAAGCCCTGGCTATGCTTTTGCTTACCTGGTGTCTTGTCGCGTTAACCATGATTGAT
TTCGATAAGATGATTTTACCGGATCAAATCACTCTGCCATTGATATGGATAGGTCTGCTATTAAATTTAAATGGCATGTT
TGTAGATATTGAGCAGGCCGTGCTGGGCGCCGTTGCTGGCTACATGAGTTTGTACACGATATTTTGGCTATTTAAGCTGA
TAACCGGCAAGGAAGGTATGGGTTTTGGAGATTTTAAGCTGGTAGCGGTATTTGGCGCATGGTTTGGATATGCATTACTG
CCATTACTGATATTAATGGCATCTTTAGTAGGTGCTGTTATCGGTATCGCACTGATGGTATTTAAAAACCATGAAGGTTC
AAAACCGATTCCGTTTGGTCCTTATCTCGCCATTGCTGGCTGGATAACGGCTTTGTTTGGTGAAGATATCTGGTCCTGGT
ATATGGGACTACTGGTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-137)

• Type IV leader peptidase family (Peptidase_A24) (148-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	48.322	99.666	0.482
pilD	Acinetobacter nosocomialis M2	47.651	99.666	0.475
pilD	Vibrio cholerae strain A1552	48.454	97.324	0.472
pilD	Neisseria gonorrhoeae MS11	50.37	90.301	0.455
pilD	Vibrio campbellii strain DS40M4	46.207	96.99	0.448