Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FNL95_RS13615 Genome accession   NZ_CP041620
Coordinates   2546742..2547278 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain C32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2541742..2552278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL95_RS13595 soxR 2543471..2543935 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  FNL95_RS13600 soxS 2544021..2544344 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FNL95_RS13605 pdeC 2544380..2545933 (-) 1554 WP_001540433.1 c-di-GMP phosphodiesterase PdeC -
  FNL95_RS13610 - 2546362..2546643 (+) 282 WP_001296643.1 YjcB family protein -
  FNL95_RS13615 ssb 2546742..2547278 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FNL95_RS13620 uvrA 2547533..2550355 (+) 2823 WP_001774120.1 excinuclease ABC subunit UvrA -
  FNL95_RS13625 - 2550564..2550920 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FNL95_RS13630 - 2550924..2551340 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FNL95_RS13635 aphA 2551451..2552164 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=372491 FNL95_RS13615 WP_000168305.1 2546742..2547278(-) (ssb) [Shigella flexneri strain C32]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=372491 FNL95_RS13615 WP_000168305.1 2546742..2547278(-) (ssb) [Shigella flexneri strain C32]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment