Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FK728_RS16585 Genome accession   NZ_CP041587
Coordinates   3496940..3497680 (-) Length   246 a.a.
NCBI ID   WP_000076100.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491940..3502680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS16565 (FK728_03284) aroB 3492482..3493564 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  FK728_RS16570 (FK728_03285) aroK 3493593..3494162 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FK728_RS16575 (FK728_03286) pilQ 3494174..3496339 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  FK728_RS16580 (FK728_03287) pilP 3496402..3496929 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FK728_RS16585 (FK728_03288) pilO 3496940..3497680 (-) 741 WP_000076100.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK728_RS16590 (FK728_03289) pilN 3497677..3498318 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  FK728_RS16595 (FK728_03290) pilM 3498318..3499376 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FK728_RS16600 (FK728_03291) ponA 3499538..3502093 (+) 2556 WP_000736674.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27861.67 Da        Isoelectric Point: 4.8357

>NTDB_id=372409 FK728_RS16585 WP_000076100.1 3496940..3497680(-) (pilO) [Acinetobacter baumannii strain J9]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFIVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=372409 FK728_RS16585 WP_000076100.1 3496940..3497680(-) (pilO) [Acinetobacter baumannii strain J9]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTATTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.136

98.78

0.683

Multiple sequence alignment