Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FK728_RS16590 Genome accession   NZ_CP041587
Coordinates   3497677..3498318 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492677..3503318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS16570 (FK728_03285) aroK 3493593..3494162 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FK728_RS16575 (FK728_03286) pilQ 3494174..3496339 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  FK728_RS16580 (FK728_03287) pilP 3496402..3496929 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FK728_RS16585 (FK728_03288) pilO 3496940..3497680 (-) 741 WP_000076100.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK728_RS16590 (FK728_03289) pilN 3497677..3498318 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  FK728_RS16595 (FK728_03290) pilM 3498318..3499376 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FK728_RS16600 (FK728_03291) ponA 3499538..3502093 (+) 2556 WP_000736674.1 penicillin-binding protein PBP1a -
  FK728_RS16605 (FK728_03292) - 3502111..3502935 (-) 825 WP_001981571.1 putative RNA methyltransferase -
  FK728_RS16610 (FK728_03293) - 3502938..3503270 (-) 333 WP_000169597.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=372410 FK728_RS16590 WP_000201224.1 3497677..3498318(-) (pilN) [Acinetobacter baumannii strain J9]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=372410 FK728_RS16590 WP_000201224.1 3497677..3498318(-) (pilN) [Acinetobacter baumannii strain J9]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment