Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FK728_RS16455 Genome accession   NZ_CP041587
Coordinates   3468820..3469638 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3463820..3474638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS16440 (FK728_03260) pilE 3464037..3464462 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  FK728_RS16445 (FK728_03261) pilY2 3464459..3464941 (-) 483 WP_001046425.1 type IV pilin protein Machinery gene
  FK728_RS16450 (FK728_03262) pilY1 3464954..3468808 (-) 3855 WP_000768962.1 PilC/PilY family type IV pilus protein Machinery gene
  FK728_RS16455 (FK728_03263) pilX 3468820..3469638 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FK728_RS16460 (FK728_03264) pilW 3469635..3470636 (-) 1002 WP_000079201.1 PilW family protein Machinery gene
  FK728_RS16465 (FK728_03265) pilV 3470637..3471197 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FK728_RS16470 (FK728_03266) fimU 3471191..3471664 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FK728_RS16475 (FK728_03267) ispH 3471834..3472784 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FK728_RS16480 (FK728_03268) gmk 3472907..3473536 (+) 630 WP_000015937.1 guanylate kinase -
  FK728_RS16485 (FK728_03269) rpoZ 3473609..3473887 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FK728_RS16490 - 3473926..3474056 (+) 131 Protein_3199 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=372403 FK728_RS16455 WP_000149374.1 3468820..3469638(-) (pilX) [Acinetobacter baumannii strain J9]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=372403 FK728_RS16455 WP_000149374.1 3468820..3469638(-) (pilX) [Acinetobacter baumannii strain J9]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTCT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment