Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   FK728_RS16460 Genome accession   NZ_CP041587
Coordinates   3469635..3470636 (-) Length   333 a.a.
NCBI ID   WP_000079201.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain J9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464635..3475636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK728_RS16450 (FK728_03262) pilY1 3464954..3468808 (-) 3855 WP_000768962.1 PilC/PilY family type IV pilus protein Machinery gene
  FK728_RS16455 (FK728_03263) pilX 3468820..3469638 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FK728_RS16460 (FK728_03264) pilW 3469635..3470636 (-) 1002 WP_000079201.1 PilW family protein Machinery gene
  FK728_RS16465 (FK728_03265) pilV 3470637..3471197 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FK728_RS16470 (FK728_03266) fimU 3471191..3471664 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FK728_RS16475 (FK728_03267) ispH 3471834..3472784 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FK728_RS16480 (FK728_03268) gmk 3472907..3473536 (+) 630 WP_000015937.1 guanylate kinase -
  FK728_RS16485 (FK728_03269) rpoZ 3473609..3473887 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FK728_RS16490 - 3473926..3474056 (+) 131 Protein_3199 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35835.50 Da        Isoelectric Point: 6.1010

>NTDB_id=372404 FK728_RS16460 WP_000079201.1 3469635..3470636(-) (pilW) [Acinetobacter baumannii strain J9]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEGLLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFTYYTIPQYRVAAQAARDSSPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=372404 FK728_RS16460 WP_000079201.1 3469635..3470636(-) (pilW) [Acinetobacter baumannii strain J9]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAATAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGGATTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCC
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTACTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATTCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.099

100

0.991

Multiple sequence alignment