Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FNB21_RS12235 Genome accession   NZ_CP041519
Coordinates   1967447..1967944 (-) Length   165 a.a.
NCBI ID   WP_035438584.1    Uniprot ID   A0AAE5PBU8
Organism   Priestia aryabhattai strain KNU10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962447..1972944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNB21_RS12200 csrA 1962890..1963120 (-) 231 WP_013059760.1 carbon storage regulator CsrA -
  FNB21_RS12205 fliW 1963145..1963567 (-) 423 WP_013059761.1 flagellar assembly protein FliW -
  FNB21_RS12210 flgL 1963649..1964530 (-) 882 WP_013059762.1 flagellar hook-associated protein FlgL -
  FNB21_RS12215 flgK 1964533..1966056 (-) 1524 WP_057275289.1 flagellar hook-associated protein FlgK -
  FNB21_RS12220 - 1966075..1966536 (-) 462 WP_223269021.1 flagellar protein FlgN -
  FNB21_RS12225 flgM 1966558..1966812 (-) 255 WP_029319359.1 flagellar biosynthesis anti-sigma factor FlgM -
  FNB21_RS12230 - 1966972..1967385 (-) 414 WP_013059766.1 TIGR03826 family flagellar region protein -
  FNB21_RS12235 comFC 1967447..1967944 (-) 498 WP_035438584.1 ComF family protein Machinery gene
  FNB21_RS12240 - 1968136..1969644 (-) 1509 WP_098196942.1 DEAD/DEAH box helicase -
  FNB21_RS12245 - 1969724..1970569 (-) 846 WP_029319365.1 DegV family protein -
  FNB21_RS12250 - 1970676..1971113 (-) 438 WP_013059770.1 YaaR family protein -
  FNB21_RS29555 fliS 1971233..1971664 (-) 432 Protein_2131 flagellar export chaperone FliS -
  FNB21_RS12260 - 1972088..1972771 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19221.00 Da        Isoelectric Point: 8.3176

>NTDB_id=372262 FNB21_RS12235 WP_035438584.1 1967447..1967944(-) (comFC) [Priestia aryabhattai strain KNU10]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKCYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEMPLVRCSGTKQSKKNRRSRLAERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAASCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=372262 FNB21_RS12235 WP_035438584.1 1967447..1967944(-) (comFC) [Priestia aryabhattai strain KNU10]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTCAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTGCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCG
CTAGCTGAACTGATCAGTGACAACATAGAAATGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ATATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAGTTGTTTGCAGGAAGCTGGGGCACGTTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus mitis NCTC 12261

36.095

100

0.37
  comFC/cflB Streptococcus pneumoniae Rx1

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.714

100

0.364

Multiple sequence alignment