NTDB

Overview

Name	crp	Type	Regulator
Locus tag	G5C59_RS09300	Genome accession	NZ_CP049088
Coordinates	1896178..1896852 (-)	Length	224 a.a.
NCBI ID	WP_005713163.1	Uniprot ID	-
Organism	Glaesserella parasuis strain sHPS7
Function	promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 1891178..1901852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5C59_RS09275 (G5C59_09235)	lolB	1891521..1892153 (+)	633	WP_021110345.1	lipoprotein insertase outer membrane protein LolB	-
G5C59_RS09280 (G5C59_09240)	ispE	1892155..1893000 (+)	846	WP_021113204.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
G5C59_RS09285 (G5C59_09245)	-	1893028..1893978 (+)	951	WP_021118653.1	ribose-phosphate pyrophosphokinase	-
G5C59_RS09290 (G5C59_09250)	pyrD	1894350..1895357 (+)	1008	WP_021111227.1	quinone-dependent dihydroorotate dehydrogenase	-
G5C59_RS09295 (G5C59_09255)	-	1895488..1895634 (-)	147	WP_021110348.1	hypothetical protein	-
G5C59_RS09300 (G5C59_09260)	crp	1896178..1896852 (-)	675	WP_005713163.1	cAMP-activated global transcriptional regulator CRP	Regulator
G5C59_RS09305 (G5C59_09265)	-	1896919..1897143 (-)	225	WP_005713165.1	YheU family protein	-
G5C59_RS09310 (G5C59_09270)	slmA	1897151..1897756 (-)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
G5C59_RS09315 (G5C59_09275)	dut	1897765..1898220 (-)	456	WP_021114418.1	dUTP diphosphatase	-
G5C59_RS09320 (G5C59_09280)	coaBC	1898217..1899422 (-)	1206	WP_021118655.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
G5C59_RS09325 (G5C59_09285)	radC	1899592..1900308 (+)	717	WP_021113221.1	RadC family protein	Machinery gene
G5C59_RS09330 (G5C59_09290)	rpmB	1900434..1900670 (+)	237	WP_006251446.1	50S ribosomal protein L28	-
G5C59_RS09335 (G5C59_09295)	rpmG	1900682..1900852 (+)	171	WP_005624479.1	50S ribosomal protein L33	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25192.17 Da Isoelectric Point: 6.9079

                                >NTDB_id=372247 G5C59_RS09300 WP_005713163.1 1896178..1896852(-) (crp) [Glaesserella parasuis strain sHPS7]

MQDVSISTAQLEDVSPLPSIHDPAVEWFLTHCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ

GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ

TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide

Download Length: 675 bp

                                >NTDB_id=372247 G5C59_RS09300 WP_005713163.1 1896178..1896852(-) (crp) [Glaesserella parasuis strain sHPS7]

ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG

GTTTTTAACTCACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT

TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA

GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG

TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC

AGATGGCTCGCCGTTTACGAATGACATCAAGGCAGGTTAGCAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA

ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT

TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGCCGTATTTTGAAAATGCTTGAGGATGAAGGGTTAATTTCTGCAC

ATGGTAAAACTATCGTTGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-121)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
crp	Vibrio cholerae strain A1552	75.862	90.625	0.687
crp	Haemophilus influenzae Rd KW20	73.399	90.625	0.665
crp	Acinetobacter baumannii D1279779	48	89.286	0.429

Detailed information NTG0372247