Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   G5C59_RS09325 Genome accession   NZ_CP049088
Coordinates   1899592..1900308 (+) Length   238 a.a.
NCBI ID   WP_021113221.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894592..1905308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS09295 (G5C59_09255) - 1895488..1895634 (-) 147 WP_021110348.1 hypothetical protein -
  G5C59_RS09300 (G5C59_09260) crp 1896178..1896852 (-) 675 WP_005713163.1 cAMP-activated global transcriptional regulator CRP Regulator
  G5C59_RS09305 (G5C59_09265) - 1896919..1897143 (-) 225 WP_005713165.1 YheU family protein -
  G5C59_RS09310 (G5C59_09270) slmA 1897151..1897756 (-) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  G5C59_RS09315 (G5C59_09275) dut 1897765..1898220 (-) 456 WP_021114418.1 dUTP diphosphatase -
  G5C59_RS09320 (G5C59_09280) coaBC 1898217..1899422 (-) 1206 WP_021118655.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  G5C59_RS09325 (G5C59_09285) radC 1899592..1900308 (+) 717 WP_021113221.1 RadC family protein Machinery gene
  G5C59_RS09330 (G5C59_09290) rpmB 1900434..1900670 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  G5C59_RS09335 (G5C59_09295) rpmG 1900682..1900852 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  G5C59_RS09340 (G5C59_09300) - 1901007..1902968 (+) 1962 WP_021118656.1 TonB-dependent receptor domain-containing protein -
  G5C59_RS09345 (G5C59_09305) - 1903137..1903502 (+) 366 WP_021118657.1 YgiW/YdeI family stress tolerance OB fold protein -
  G5C59_RS09350 (G5C59_09310) ciaR 1903563..1904234 (+) 672 WP_021111236.1 response regulator Regulator

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27291.45 Da        Isoelectric Point: 4.7438

>NTDB_id=372248 G5C59_RS09325 WP_021113221.1 1899592..1900308(+) (radC) [Glaesserella parasuis strain sHPS7]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=372248 G5C59_RS09325 WP_021113221.1 1899592..1900308(+) (radC) [Glaesserella parasuis strain sHPS7]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATTTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTAATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555