Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   G5C59_RS09350 Genome accession   NZ_CP049088
Coordinates   1903563..1904234 (+) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898563..1909234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS09325 (G5C59_09285) radC 1899592..1900308 (+) 717 WP_021113221.1 RadC family protein Machinery gene
  G5C59_RS09330 (G5C59_09290) rpmB 1900434..1900670 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  G5C59_RS09335 (G5C59_09295) rpmG 1900682..1900852 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  G5C59_RS09340 (G5C59_09300) - 1901007..1902968 (+) 1962 WP_021118656.1 TonB-dependent receptor domain-containing protein -
  G5C59_RS09345 (G5C59_09305) - 1903137..1903502 (+) 366 WP_021118657.1 YgiW/YdeI family stress tolerance OB fold protein -
  G5C59_RS09350 (G5C59_09310) ciaR 1903563..1904234 (+) 672 WP_021111236.1 response regulator Regulator
  G5C59_RS09355 (G5C59_09315) qseC 1904221..1905621 (+) 1401 WP_021118658.1 quorum sensing histidine kinase QseC -
  G5C59_RS09360 (G5C59_09320) - 1905743..1905805 (+) 63 Protein_1833 RNA-guided endonuclease TnpB family protein -
  G5C59_RS09365 (G5C59_09325) - 1906012..1906299 (+) 288 WP_005713186.1 co-chaperone GroES -
  G5C59_RS09370 (G5C59_09330) groL 1906410..1908053 (+) 1644 WP_021111239.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=372249 G5C59_RS09350 WP_021111236.1 1903563..1904234(+) (ciaR) [Glaesserella parasuis strain sHPS7]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=372249 G5C59_RS09350 WP_021111236.1 1903563..1904234(+) (ciaR) [Glaesserella parasuis strain sHPS7]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363

Multiple sequence alignment