Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G6P91_RS23675 Genome accession   NZ_CP049085
Coordinates   4827055..4827591 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain p4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4822055..4832591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6P91_RS23655 (G6P91_23675) soxR 4823787..4824248 (-) 462 WP_165696377.1 redox-sensitive transcriptional activator SoxR -
  G6P91_RS23660 (G6P91_23680) soxS 4824334..4824657 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  G6P91_RS23665 (G6P91_23685) pdeC 4824660..4826246 (-) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  G6P91_RS23670 (G6P91_23690) yjcB 4826675..4826956 (+) 282 WP_001296643.1 YjcB family protein -
  G6P91_RS23675 (G6P91_23695) ssb 4827055..4827591 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G6P91_RS23680 (G6P91_23700) uvrA 4827846..4830668 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  G6P91_RS23685 (G6P91_23705) yjbR 4830703..4831059 (-) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  G6P91_RS23690 (G6P91_23710) yjbQ 4831063..4831479 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G6P91_RS23695 (G6P91_23715) aphA 4831590..4832303 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=372193 G6P91_RS23675 WP_000168305.1 4827055..4827591(-) (ssb) [Escherichia coli strain p4A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=372193 G6P91_RS23675 WP_000168305.1 4827055..4827591(-) (ssb) [Escherichia coli strain p4A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489