Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   MCR_RS00515 Genome accession   NC_014147
Coordinates   122670..124334 (-) Length   554 a.a.
NCBI ID   WP_013107650.1    Uniprot ID   -
Organism   Moraxella catarrhalis BBH18     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117670..129334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCR_RS09200 - 118168..119010 (+) 843 WP_264610414.1 efflux RND transporter permease subunit -
  MCR_RS00495 (MCR_0105) - 119272..119817 (+) 546 WP_013107649.1 DUF924 family protein -
  MCR_RS00500 (MCR_0106) coaE 119809..120444 (-) 636 WP_003670719.1 dephospho-CoA kinase -
  MCR_RS00505 (MCR_0107) - 120596..121372 (-) 777 WP_003663394.1 A24 family peptidase -
  MCR_RS00510 (MCR_0108) - 121372..122631 (-) 1260 WP_003670027.1 type II secretion system F family protein -
  MCR_RS00515 (MCR_0109) pilB 122670..124334 (-) 1665 WP_013107650.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MCR_RS00520 (MCR_0110) - 124489..125712 (+) 1224 WP_003670024.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 60974.26 Da        Isoelectric Point: 6.9938

>NTDB_id=37184 MCR_RS00515 WP_013107650.1 122670..124334(-) (pilB) [Moraxella catarrhalis BBH18]
MTAVLPSLAPLILQHQLMTEDALSKAATDAKNLQRSFVQHLVASGLIDAAKLLHIQSLSYNLPIYEPPSQLSQVVETGLD
PALFIKYRMLPLSCDKHTLTLAMSDATDKDAIGAMRFHARRQIRPMLVEEDKLSALLDRLYLDTDTFEDTQKIGPNSQAT
TDDAPTVGFVNKLFTDAIRLKASDIHFEPYDASYRIRFRIDGVMQVIHNPPKSMAAQIASYIKVMANLDIAERRRAQDGR
LKFDAQDGQSVDFRVSTLPTLHGEKVVLRLLDSAQALIGLDALGMDDTQKQLFIHALSRPQGMILVTGPTGSGKTVSLYT
ALMRLNQPEINILSCEDPVEINLAGINQVNINPKVQLDFADALRAFLRQDPDVIMVGEIRDTDTVQIATTAAQTGHLVLS
TLHTNSASDTITRMHSMGVPSFHLASSLSLIIAQRLARRLCDECKKPITIPDEALRLAGFSDQDIAKQPTLYAPVGCHKC
KNGHKGRIGIFEVLPITPPMAELILTQASAAKIDALARTQGHDNLRQAGIKKVLTGQISLTEMHRVTSESWLNH

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=37184 MCR_RS00515 WP_013107650.1 122670..124334(-) (pilB) [Moraxella catarrhalis BBH18]
ATGACCGCCGTCCTGCCATCACTTGCCCCCCTAATCTTACAACATCAGCTGATGACAGAAGATGCCTTATCAAAAGCTGC
CACTGATGCCAAAAATTTGCAACGCTCATTTGTTCAGCATTTGGTCGCAAGCGGACTCATTGATGCCGCCAAGCTTTTGC
ACATCCAAAGTTTAAGCTACAACTTACCCATTTATGAGCCGCCCAGTCAGCTTAGCCAAGTCGTTGAAACAGGCCTAGAC
CCTGCATTATTTATTAAATATCGAATGCTACCTTTAAGCTGTGATAAGCACACGCTGACCTTAGCTATGAGCGATGCCAC
CGATAAAGATGCCATTGGGGCCATGCGTTTTCATGCACGCCGTCAGATCCGACCTATGCTGGTTGAAGAAGATAAGCTAT
CTGCCTTATTAGATAGGCTATATTTAGATACAGATACTTTTGAGGATACCCAAAAAATAGGGCCAAACTCCCAAGCTACA
ACAGATGACGCCCCCACCGTAGGCTTTGTCAATAAGTTATTCACCGATGCCATCCGCCTAAAAGCATCCGATATTCATTT
TGAGCCTTATGATGCCAGTTATCGCATTCGCTTTCGTATTGATGGGGTAATGCAAGTGATACACAATCCACCCAAATCAA
TGGCCGCTCAGATTGCCTCTTATATCAAAGTCATGGCAAATTTGGATATCGCTGAGCGTCGCCGTGCTCAAGATGGACGC
TTAAAATTTGATGCTCAAGATGGGCAATCGGTGGACTTTCGTGTCAGCACACTGCCTACTTTACATGGTGAAAAGGTCGT
ACTTAGGCTACTGGACTCTGCTCAGGCACTCATTGGGCTAGATGCACTTGGCATGGACGATACTCAAAAACAGTTATTTA
TTCATGCACTATCACGCCCTCAAGGCATGATTTTGGTCACAGGTCCTACAGGATCAGGTAAGACAGTTTCGCTGTACACA
GCTTTGATGCGTCTTAATCAGCCTGAAATTAATATTTTAAGCTGTGAAGATCCTGTTGAGATTAACTTAGCTGGTATTAA
TCAAGTCAATATTAATCCTAAAGTACAGCTGGATTTTGCCGATGCACTCAGAGCATTTTTACGCCAAGACCCTGATGTCA
TTATGGTTGGGGAAATTCGTGATACTGACACCGTCCAAATCGCCACAACCGCCGCTCAAACGGGGCATTTGGTCTTATCA
ACGCTGCACACCAATTCAGCCAGTGATACCATCACGCGTATGCACAGTATGGGCGTGCCATCTTTTCATTTGGCAAGCAG
CTTAAGCCTAATCATCGCCCAAAGATTAGCTCGCCGACTGTGCGATGAATGCAAAAAACCCATCACCATTCCCGATGAGG
CATTACGCTTGGCAGGGTTTAGCGATCAAGATATCGCCAAACAACCAACACTGTACGCACCTGTCGGATGCCATAAATGT
AAAAATGGCCACAAAGGACGCATTGGCATCTTTGAGGTATTACCCATCACGCCGCCCATGGCCGAATTGATTTTAACGCA
GGCATCTGCCGCCAAAATTGATGCTTTGGCACGCACCCAAGGCCATGACAATCTTAGACAAGCAGGCATCAAAAAAGTAC
TCACCGGCCAAATTAGCCTCACTGAGATGCACCGTGTCACCTCTGAATCATGGCTAAATCACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(172-439)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(41-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.54

98.917

0.48
  pilB Acinetobacter baumannii D1279779

50.099

91.155

0.457
  pilB Legionella pneumophila strain ERS1305867

45.64

97.292

0.444
  pilB Vibrio parahaemolyticus RIMD 2210633

45.506

96.39

0.439
  pilB Vibrio cholerae strain A1552

47.942

87.726

0.421
  pilB Vibrio campbellii strain DS40M4

47.51

87.004

0.413
  pilF Neisseria gonorrhoeae MS11

46.598

87.545

0.408

Multiple sequence alignment