Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FMO13_RS03800 Genome accession   NZ_CP041382
Coordinates   904369..904896 (-) Length   175 a.a.
NCBI ID   WP_017157214.1    Uniprot ID   A0A8I1XL23
Organism   Xanthomonas phaseoli pv. dieffenbachiae strain PL36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 899369..909896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMO13_RS03785 (FMO13_03930) paoA 900261..900911 (-) 651 WP_057677929.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  FMO13_RS03790 (FMO13_03935) - 901321..902328 (-) 1008 WP_209225945.1 zinc-dependent alcohol dehydrogenase family protein -
  FMO13_RS03795 (FMO13_03940) - 902537..904084 (+) 1548 WP_170922401.1 sensor domain-containing diguanylate cyclase -
  FMO13_RS03800 (FMO13_03945) ssb 904369..904896 (-) 528 WP_017157214.1 single-stranded DNA-binding protein Machinery gene
  FMO13_RS03805 (FMO13_03950) - 905172..906170 (+) 999 WP_057662341.1 polyprenyl synthetase family protein -
  FMO13_RS03810 (FMO13_03955) - 906370..907170 (-) 801 WP_209225942.1 dienelactone hydrolase family protein -
  FMO13_RS03815 (FMO13_03960) murD 907489..908895 (-) 1407 WP_057677926.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18810.68 Da        Isoelectric Point: 5.3095

>NTDB_id=371757 FMO13_RS03800 WP_017157214.1 904369..904896(-) (ssb) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=371757 FMO13_RS03800 WP_017157214.1 904369..904896(-) (ssb) [Xanthomonas phaseoli pv. dieffenbachiae strain PL36]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGATACCAAATACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCTACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATTGCCGGCGAATACCTGCGCAAGGGGTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCACCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGCGGTGGATACGGTGGCGGTGGGCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAGCAACAG
TCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.078

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.935

100

0.451
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.451

Multiple sequence alignment