Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   G4V53_RS02340 Genome accession   NZ_CP048902
Coordinates   450242..450718 (+) Length   158 a.a.
NCBI ID   WP_203004379.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH207     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445242..455718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V53_RS02315 dnaB 445804..447210 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V53_RS02320 pilH 447365..448030 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V53_RS02325 pilV 448062..448673 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  G4V53_RS02330 pilJ 448670..449650 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  G4V53_RS02335 pilK 449629..450240 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V53_RS02340 pilL 450242..450718 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V53_RS02345 - 450788..451096 (-) 309 WP_010951048.1 AzlD family protein -
  G4V53_RS02350 - 451093..451800 (-) 708 Protein_463 AzlC family ABC transporter permease -
  G4V53_RS02355 dut 451966..452418 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V53_RS02360 dapC 452496..453683 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  G4V53_RS02365 yaaA 453994..454773 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.47 Da        Isoelectric Point: 9.4067

>NTDB_id=371271 G4V53_RS02340 WP_203004379.1 450242..450718(+) (pilL) [Neisseria gonorrhoeae strain SRRSH207]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=371271 G4V53_RS02340 WP_203004379.1 450242..450718(+) (pilL) [Neisseria gonorrhoeae strain SRRSH207]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATG
CCACTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

99.367

100

0.994
  pilX Neisseria meningitidis 8013

85.443

100

0.854