Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   G4V53_RS02330 Genome accession   NZ_CP048902
Coordinates   448670..449650 (+) Length   326 a.a.
NCBI ID   WP_010951046.1    Uniprot ID   Q5F9E4
Organism   Neisseria gonorrhoeae strain SRRSH207     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443670..454650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V53_RS02305 - 444318..444827 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  G4V53_RS02310 - 445059..445640 (-) 582 WP_047923823.1 superoxide dismutase -
  G4V53_RS02315 dnaB 445804..447210 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V53_RS02320 pilH 447365..448030 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V53_RS02325 pilV 448062..448673 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  G4V53_RS02330 pilJ 448670..449650 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  G4V53_RS02335 pilK 449629..450240 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V53_RS02340 pilL 450242..450718 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V53_RS02345 - 450788..451096 (-) 309 WP_010951048.1 AzlD family protein -
  G4V53_RS02350 - 451093..451800 (-) 708 Protein_463 AzlC family ABC transporter permease -
  G4V53_RS02355 dut 451966..452418 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V53_RS02360 dapC 452496..453683 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35949.07 Da        Isoelectric Point: 9.7237

>NTDB_id=371269 G4V53_RS02330 WP_010951046.1 448670..449650(+) (pilJ) [Neisseria gonorrhoeae strain SRRSH207]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNLAKPGAKQENPLFSLKRSGMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=371269 G4V53_RS02330 WP_010951046.1 448670..449650(+) (pilJ) [Neisseria gonorrhoeae strain SRRSH207]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

75.988

100

0.767