Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPA_RS02015 Genome accession   NC_014125
Coordinates   445517..445996 (-) Length   159 a.a.
NCBI ID   WP_013101072.1    Uniprot ID   -
Organism   Legionella pneumophila 2300/99 Alcoy     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 440517..450996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA_RS01980 (lpa_00560) rplO 440642..441076 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  LPA_RS01985 (lpa_00561) secY 441079..442407 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  LPA_RS15765 rpmJ 442424..442537 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  LPA_RS01990 (lpa_00562) rpsM 442615..442971 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  LPA_RS01995 (lpa_00564) rpsK 442995..443393 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  LPA_RS02000 (lpa_00565) rpsD 443410..444030 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  LPA_RS02005 (lpa_00566) - 444049..445041 (+) 993 WP_011945553.1 DNA-directed RNA polymerase subunit alpha -
  LPA_RS02010 (lpa_00567) rplQ 445060..445443 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  LPA_RS02015 (lpa_00569) ssb 445517..445996 (-) 480 WP_013101072.1 single-stranded DNA-binding protein Machinery gene
  LPA_RS02020 (lpa_00571) - 446080..447447 (-) 1368 WP_011945555.1 MFS transporter -
  LPA_RS02025 (lpa_00572) fabL 447609..448367 (+) 759 WP_011945556.1 enoyl-[acyl-carrier-protein] reductase FabL -
  LPA_RS02030 (lpa_00573) - 448438..448851 (+) 414 WP_010946108.1 acyl carrier protein -
  LPA_RS02035 (lpa_00574) - 448851..449747 (+) 897 WP_011945557.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17613.38 Da        Isoelectric Point: 4.6616

>NTDB_id=37120 LPA_RS02015 WP_013101072.1 445517..445996(-) (ssb) [Legionella pneumophila 2300/99 Alcoy]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSGATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=37120 LPA_RS02015 WP_013101072.1 445517..445996(-) (ssb) [Legionella pneumophila 2300/99 Alcoy]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTGGTGCCACTAATTACGATGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.82

100

0.585
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

40.23

100

0.44
  ssb Neisseria meningitidis MC58

40.23

100

0.44

Multiple sequence alignment