Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FK538_RS13125 Genome accession   NZ_CP041295
Coordinates   2726347..2726913 (-) Length   188 a.a.
NCBI ID   WP_045795510.1    Uniprot ID   A0AAW8Z9U3
Organism   Acinetobacter indicus strain 80-1-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2721347..2731913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK538_RS13105 (FK538_13110) - 2721904..2722728 (-) 825 WP_168370785.1 SAM-dependent methyltransferase -
  FK538_RS13110 (FK538_13115) - 2722732..2724030 (-) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  FK538_RS13115 (FK538_13120) - 2724464..2725339 (-) 876 WP_168370786.1 pirin family protein -
  FK538_RS13120 (FK538_13125) ahpC 2725541..2726104 (-) 564 WP_016658414.1 alkyl hydroperoxide reductase subunit C -
  FK538_RS13125 (FK538_13130) ssb 2726347..2726913 (-) 567 WP_045795510.1 single-stranded DNA-binding protein Machinery gene
  FK538_RS13130 (FK538_13135) - 2726965..2728329 (-) 1365 WP_168370787.1 MFS transporter -
  FK538_RS13135 (FK538_13140) - 2728483..2729565 (-) 1083 WP_005180731.1 DUF475 domain-containing protein -
  FK538_RS13140 (FK538_13145) tenA 2729833..2730510 (+) 678 WP_104505660.1 thiaminase II -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20667.41 Da        Isoelectric Point: 6.4819

>NTDB_id=371062 FK538_RS13125 WP_045795510.1 2726347..2726913(-) (ssb) [Acinetobacter indicus strain 80-1-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFNQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=371062 FK538_RS13125 WP_045795510.1 2726347..2726913(-) (ssb) [Acinetobacter indicus strain 80-1-2]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCGGGTCGTCAGCAAGGTGAGCAGGGCGATAACGGTTTTAATCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAGGCTCAAGGCGGTTTTAACAACAATAATGCCGGTGGTGGTTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.646

100

0.548
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment