Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FK537_RS09065 Genome accession   NZ_CP041291
Coordinates   1804353..1804919 (+) Length   188 a.a.
NCBI ID   WP_168369933.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 94-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1799353..1809919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK537_RS09050 (FK537_09120) tenA 1800759..1801436 (-) 678 WP_104489303.1 thiaminase II -
  FK537_RS09055 (FK537_09125) - 1801702..1802784 (+) 1083 WP_005180731.1 DUF475 domain-containing protein -
  FK537_RS09060 (FK537_09130) - 1802937..1804301 (+) 1365 WP_104483896.1 MFS transporter -
  FK537_RS09065 (FK537_09135) ssb 1804353..1804919 (+) 567 WP_168369933.1 single-stranded DNA-binding protein Machinery gene
  FK537_RS09070 (FK537_09140) ahpC 1805162..1805725 (+) 564 WP_005180661.1 alkyl hydroperoxide reductase subunit C -
  FK537_RS09075 (FK537_09145) - 1805926..1806801 (+) 876 WP_168369934.1 pirin family protein -
  FK537_RS09080 (FK537_09150) - 1807236..1808534 (+) 1299 WP_034598019.1 FAD-dependent oxidoreductase -
  FK537_RS09085 (FK537_09155) - 1808538..1809362 (+) 825 WP_168369935.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20697.44 Da        Isoelectric Point: 6.4819

>NTDB_id=371004 FK537_RS09065 WP_168369933.1 1804353..1804919(+) (ssb) [Acinetobacter indicus strain 94-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFNQPRFNNNQGGGYSNNNQGSYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=371004 FK537_RS09065 WP_168369933.1 1804353..1804919(+) (ssb) [Acinetobacter indicus strain 94-2]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCGGGTCGTCAGCAAGGTGAGCAGGGCGATAACGGTTTTAATCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTAGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.646

100

0.548
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria gonorrhoeae MS11

39.362

100

0.394
  ssb Neisseria meningitidis MC58

38.421

100

0.388

Multiple sequence alignment