Detailed information NTG0037089

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: HMPREF0772_RS08020
• Genome accession: NC_017342
• Coordinates: 1589727..1590413 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus TCH60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1584727..1595413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0772_RS08000 (HMPREF0772_11486)	-	1584848..1587478 (+)	2631	WP_000425359.1	valine--tRNA ligase	-
HMPREF0772_RS08005 (HMPREF0772_11487)	-	1587491..1588762 (+)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
HMPREF0772_RS08015 (HMPREF0772_11488)	-	1589023..1589730 (+)	708	WP_000261106.1	A24 family peptidase	-
HMPREF0772_RS08020 (HMPREF0772_11489)	ysxA/radC	1589727..1590413 (+)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
HMPREF0772_RS08025 (HMPREF0772_11490)	-	1590481..1590765 (+)	285	WP_000171861.1	hypothetical protein	-
HMPREF0772_RS14650 (HMPREF0772_11491)	-	1590881..1591078 (-)	198	WP_000025835.1	hypothetical protein	-
HMPREF0772_RS08030 (HMPREF0772_11492)	-	1591238..1591711 (+)	474	WP_001236733.1	DUF4930 family protein	-
HMPREF0772_RS08035	-	1591785..1591904 (+)	120	WP_000840603.1	hypothetical protein	-
HMPREF0772_RS08040 (HMPREF0772_11493)	mreC	1592104..1592946 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
HMPREF0772_RS08045 (HMPREF0772_11494)	mreD	1592946..1593476 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
HMPREF0772_RS08050 (HMPREF0772_11495)	rplU	1593769..1594077 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
HMPREF0772_RS08055 (HMPREF0772_11496)	-	1594083..1594403 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HMPREF0772_RS08060 (HMPREF0772_11497)	rpmA	1594415..1594699 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=37089 HMPREF0772_RS08020 WP_000692886.1 1589727..1590413(+) (ysxA/radC) [Staphylococcus aureus subsp. aureus TCH60]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=37089 HMPREF0772_RS08020 WP_000692886.1 1589727..1590413(+) (ysxA/radC) [Staphylococcus aureus subsp. aureus TCH60]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377