Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FKV23_RS13215 Genome accession   NZ_CP041242
Coordinates   2989670..2991034 (+) Length   454 a.a.
NCBI ID   WP_141624266.1    Uniprot ID   -
Organism   Marilutibacter alkalisoli strain SJ-36     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984670..2996034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV23_RS13190 (FKV23_13190) - 2984742..2985125 (-) 384 WP_141624261.1 endonuclease domain-containing protein -
  FKV23_RS13195 (FKV23_13195) sucD 2985386..2986261 (-) 876 WP_141624262.1 succinate--CoA ligase subunit alpha -
  FKV23_RS13200 (FKV23_13200) sucC 2986430..2987593 (-) 1164 WP_141624263.1 ADP-forming succinate--CoA ligase subunit beta -
  FKV23_RS13210 (FKV23_13210) - 2987888..2989543 (+) 1656 WP_244244006.1 PAS domain-containing sensor histidine kinase -
  FKV23_RS13215 (FKV23_13215) pilR 2989670..2991034 (+) 1365 WP_141624266.1 sigma-54 dependent transcriptional regulator Regulator
  FKV23_RS13220 (FKV23_13220) - 2991148..2991402 (+) 255 WP_208543295.1 antitoxin of toxin-antitoxin stability system -
  FKV23_RS13225 (FKV23_13225) - 2991399..2991689 (+) 291 WP_141624268.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FKV23_RS17840 (FKV23_13230) - 2991742..2992026 (-) 285 WP_407067626.1 addiction module protein -
  FKV23_RS17385 - 2992370..2992469 (+) 100 Protein_2629 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FKV23_RS17845 - 2993076..2993177 (+) 102 Protein_2630 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FKV23_RS13245 (FKV23_13245) pilB 2993751..2995472 (+) 1722 WP_141624272.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49843.94 Da        Isoelectric Point: 6.1387

>NTDB_id=370773 FKV23_RS13215 WP_141624266.1 2989670..2991034(+) (pilR) [Marilutibacter alkalisoli strain SJ-36]
MTETRSALIVDDERDIRELLVMTLGRMGLRCDTASSVGDARAQLQRNRYDLCLTDMRLPDGSGIELISDISQKYPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLNVLRDLVRHALDLQAARKADVDAVASRLYGDSPAMTTLRQTIAKVSRSQAP
VYIAGESGVGKELVARTIHAEGARSAGPFVPVNCGAIPSELMESEFFGHKKGSFTGAHADKPGLFQTAEGGTLFLDEVAE
LPLPMQVKLLRAIQEKSVRAVGANSENPVDVRILSATHKDLSKLVAEGRFRQDLYYRINVIELRVPPLRERLEDLPGLSA
RILGRLAEAQGRVVPRLDDSAVDALRKYPFPGNVRELENILERALALADDEMLTAGDLHLPRVETDPHNSPLDPRTLDPR
DTATSALPSYIEEIERAAIQHALQENRYNKTRTAQALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=370773 FKV23_RS13215 WP_141624266.1 2989670..2991034(+) (pilR) [Marilutibacter alkalisoli strain SJ-36]
ATGACCGAGACACGCAGCGCACTCATCGTCGACGACGAACGCGACATCCGCGAACTCCTGGTGATGACACTGGGCCGGAT
GGGGCTGCGTTGCGACACCGCGTCCAGCGTCGGCGATGCCCGTGCCCAGTTGCAGCGCAACCGCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGTTCCGGCATCGAGTTGATCAGCGACATCAGCCAGAAATACCCGGAAACCCCGGTCGCC
ATGATCACCGCCTTCGGCAACGTCGAGGCCGCGGTCGAGGCGCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCCGT
CGATCTCAACGTGCTGCGCGACCTGGTCCGCCACGCGCTCGACCTGCAGGCCGCACGCAAGGCCGATGTCGATGCCGTCG
CCTCGCGCCTGTATGGCGATTCCCCGGCCATGACCACGCTGCGGCAGACCATCGCCAAGGTCTCGCGCAGCCAGGCCCCG
GTCTACATCGCCGGTGAATCCGGCGTCGGCAAGGAACTGGTCGCCCGCACCATCCACGCCGAGGGTGCCCGTTCGGCCGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGTGCCCACGCCGACAAGCCGGGCCTGTTCCAGACCGCCGAGGGCGGCACCCTGTTCCTCGACGAGGTCGCCGAA
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCCGTCCGCGCGGTCGGCGCCAACAGCGAGAA
CCCGGTCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGTCGAAACTGGTCGCCGAAGGCCGGTTCCGCCAGGATC
TCTACTACCGCATCAACGTCATCGAACTGCGCGTGCCACCGCTGCGCGAGCGCCTCGAAGACCTGCCCGGCCTGTCGGCC
CGCATCCTCGGCCGCCTCGCCGAAGCCCAGGGCCGCGTGGTGCCGCGGCTCGACGACAGCGCCGTCGACGCCCTGCGCAA
GTACCCGTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCCCTCGCCGACGACGAAATGCTGA
CCGCCGGCGACCTGCACCTGCCCCGCGTCGAGACCGACCCCCACAACAGTCCGCTCGATCCGCGCACCCTCGACCCGCGC
GACACCGCCACCAGCGCCCTGCCCTCATACATCGAGGAGATCGAGCGTGCCGCCATCCAGCACGCCCTGCAGGAAAACCG
CTACAACAAGACCCGCACCGCGCAGGCCCTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAACTCGGGATCG
ACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(411-451)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.389

99.559

0.621
  pilR Acinetobacter baumannii strain A118

47.817

100

0.482
  luxO Vibrio cholerae strain A1552

36.854

98.018

0.361

Multiple sequence alignment