Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FKZ69_RS19400 Genome accession   NZ_CP041236
Coordinates   4178369..4180660 (-) Length   763 a.a.
NCBI ID   WP_141607689.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain P45A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4173369..4185660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKZ69_RS19365 (FKZ69_19365) murB 4173817..4174836 (-) 1020 WP_092488774.1 UDP-N-acetylmuramate dehydrogenase -
  FKZ69_RS19370 (FKZ69_19370) - 4174833..4175297 (-) 465 WP_141606708.1 low molecular weight protein-tyrosine-phosphatase -
  FKZ69_RS19375 (FKZ69_19375) kdsB 4175297..4176061 (-) 765 WP_141606709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FKZ69_RS19380 (FKZ69_19380) - 4176058..4176243 (-) 186 WP_003174668.1 Trm112 family protein -
  FKZ69_RS19385 (FKZ69_19385) lpxK 4176267..4177277 (-) 1011 WP_141606710.1 tetraacyldisaccharide 4'-kinase -
  FKZ69_RS19390 (FKZ69_19390) - 4177277..4177705 (-) 429 WP_027607319.1 ExbD/TolR family protein -
  FKZ69_RS19395 (FKZ69_19395) exbB 4177702..4178337 (-) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FKZ69_RS19400 (FKZ69_19400) comA 4178369..4180660 (-) 2292 WP_141607689.1 ComEC/Rec2 family competence protein Machinery gene
  FKZ69_RS19405 (FKZ69_19405) - 4180808..4181323 (+) 516 WP_027607322.1 DUF2062 domain-containing protein -
  FKZ69_RS19410 (FKZ69_19410) - 4181327..4182694 (-) 1368 WP_092488780.1 sensor histidine kinase -
  FKZ69_RS19415 (FKZ69_19415) - 4182684..4183412 (-) 729 WP_092488781.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 82796.88 Da        Isoelectric Point: 10.4358

>NTDB_id=370725 FKZ69_RS19400 WP_141607689.1 4178369..4180660(-) (comA) [Pseudomonas azotoformans strain P45A]
MFALALGLLALRFLPALPSTGWLIAMLVLALMLLPFRTSPLAFFLLGLSWACISAQWALDDRLRPVLDGQTRWLEGRVTG
LPQQTGTGVRFELADSQARNARLPKRIRVFWHGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATGSVKD
GERLAPARHAWRDTVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGLVALL
ARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPLASLQ
PGFWLSFMAVAVLVLGFGGRLGPWSVWQAWTRPQCLIAVGLFPVLLVLGLPVSVSAPLANLVAVPWISLAVLPLALLGSA
LLPLPYAGEGLLWLAGGALDGLFRGLAWLAGQMPAWIPAEVPLGYWLISLVGAVLLLLPSGVPFRPLGLPLLLLAVFPPR
ELVPHGRVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGTVDLGARVVVPALKKLGVGTLDMMLLSHADADHAGGASAVA
RGMPIRRVVGGETEGLPAFLATQPCVSGEQWEWDGVAFELWQWPDAIDGNPKSCVLQVQANGERLLLTGDIDRAAERAFL
ASSLAVRTDWLQSPHHGSRSSSSWPFLQQLAPTSVLISRGRGNAFGHPHPQVVERYQRLGSQIYDSAEQGAVRVQLGAFQ
PPTVARSQRRFWRETLPRAGHAKDRRLGQTGPWPTNPAAEPIW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=370725 FKZ69_RS19400 WP_141607689.1 4178369..4180660(-) (comA) [Pseudomonas azotoformans strain P45A]
ATGTTCGCGCTCGCGCTGGGGTTGCTTGCCTTGCGCTTTCTACCGGCGTTGCCGTCGACGGGGTGGCTGATAGCCATGTT
GGTGCTGGCATTGATGCTATTGCCTTTTCGTACGTCGCCACTGGCATTTTTCCTGCTGGGCTTGAGCTGGGCCTGCATCA
GCGCGCAGTGGGCGCTGGATGATCGACTACGGCCGGTGCTGGATGGCCAGACGCGATGGCTGGAAGGCCGTGTAACCGGG
TTGCCGCAGCAGACAGGGACGGGCGTGCGTTTTGAGCTGGCCGACAGCCAGGCGCGCAACGCCCGGTTGCCCAAGCGCAT
CCGGGTGTTTTGGCACGGCGGGCCGCCGGTACGCAGTGGCGAGCGCTGGCGTCTGGCCGTGACGCTGAAACGGCCTGCCG
GGCTGCTCAATTTTCACGGTTTCGATCAGGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGCTCGGTGAAGGAT
GGTGAGCGTCTGGCGCCGGCGCGTCATGCCTGGCGTGACACGGTCCGCCAACGCCTGATGGCGGTGGACGCCCAAGGCCG
CGAGGCGGGCCTGGCGGCTTTGGTGCTGGGGGATGGCTCCGGGCTGGCGGCCGAAGACTGGCAGGTGTTGCAGGACACCG
GTACGGTGCACCTGTTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGGTTGGTCGCGCTACTT
GCGCGCTACGGCTGCTGGCCCCGCACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTGCCGCCGCGCTGGGGTA
CGGCCTGCTGGCAGGGTTTGGCGTGCCGGTGCAACGGGCCTGCGTCATGGTGGGGCTGGTGTTGTTGTGGCGCCTGCGCT
TTCGTCATCTGGGCTTCTGGTGGCCGTTGTTGCTGGCACTCAATGGCGTGCTGATCCTGGAGCCACTGGCCAGCTTGCAA
CCCGGATTCTGGCTGTCCTTCATGGCTGTCGCGGTGCTGGTCCTGGGATTTGGTGGGCGCTTGGGGCCGTGGAGTGTCTG
GCAGGCATGGACACGTCCCCAGTGCTTGATTGCCGTTGGTCTGTTTCCTGTGTTGCTGGTGCTCGGCTTGCCCGTCAGCG
TCAGTGCGCCGCTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGCGGTGTTGCCCCTGGCGTTGCTGGGGAGCGCA
TTGTTGCCGCTGCCGTATGCGGGTGAGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTTGACGGGTTGTTCCGGGGCTTGGC
ATGGCTCGCTGGGCAAATGCCTGCCTGGATACCGGCCGAGGTGCCCCTGGGTTACTGGCTGATCAGCCTGGTCGGCGCGG
TGCTGTTACTGCTGCCCAGCGGCGTGCCGTTTCGGCCCCTGGGCTTGCCGCTGCTATTATTGGCCGTGTTTCCACCCCGC
GAGCTCGTGCCCCATGGGCGGGTGGAGGTGGTGCAGCTGGATGTCGGGCAAGGTCAGGCCTTGATCCTGCGTACCCGCCA
TCACACGTTGCTCTACGATGCCGGCCCGCGTTCGGGGACGGTTGACCTCGGTGCCCGTGTGGTAGTGCCTGCGTTGAAAA
AACTCGGCGTCGGGACGCTGGATATGATGCTGCTGAGCCACGCCGACGCCGATCATGCCGGTGGGGCGTCGGCTGTCGCC
CGAGGGATGCCGATCCGGCGTGTCGTGGGCGGTGAAACCGAAGGGTTGCCCGCGTTTCTCGCCACCCAGCCCTGCGTCAG
CGGCGAACAGTGGGAGTGGGACGGTGTGGCATTCGAGCTGTGGCAGTGGCCTGATGCGATTGATGGCAACCCCAAGTCCT
GTGTTCTGCAGGTCCAGGCCAATGGTGAGCGGCTGCTGCTCACGGGGGATATTGATCGGGCTGCCGAGCGAGCATTTCTC
GCGTCTTCGCTGGCCGTGCGCACCGATTGGCTGCAGTCGCCTCACCATGGCAGCCGCAGTTCGTCGTCGTGGCCTTTTCT
ACAGCAGCTGGCGCCCACGTCGGTGCTGATTTCCCGTGGGCGTGGCAATGCGTTCGGCCATCCTCACCCGCAGGTGGTGG
AGCGCTACCAGCGACTGGGCAGCCAGATATACGACAGTGCCGAGCAGGGCGCGGTGCGTGTGCAATTAGGGGCTTTCCAG
CCACCGACTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAACGTTACCCAGAGCCGGCCATGCCAAAGACCGGCGCCT
GGGACAGACGGGTCCATGGCCGACGAACCCCGCCGCCGAACCTATATGGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-459)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-642)

Domain of unknown function (DUF4131) (DUF4131)

(15-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

94.364

0.573
  comA Ralstonia pseudosolanacearum GMI1000

35.25

100

0.37

Multiple sequence alignment