Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FKZ69_RS19395 Genome accession   NZ_CP041236
Coordinates   4177702..4178337 (-) Length   211 a.a.
NCBI ID   WP_027607320.1    Uniprot ID   A0A7Y1IKE2
Organism   Pseudomonas azotoformans strain P45A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4172702..4183337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKZ69_RS19360 (FKZ69_19360) - 4173083..4173754 (+) 672 WP_027607314.1 Bax inhibitor-1/YccA family protein -
  FKZ69_RS19365 (FKZ69_19365) murB 4173817..4174836 (-) 1020 WP_092488774.1 UDP-N-acetylmuramate dehydrogenase -
  FKZ69_RS19370 (FKZ69_19370) - 4174833..4175297 (-) 465 WP_141606708.1 low molecular weight protein-tyrosine-phosphatase -
  FKZ69_RS19375 (FKZ69_19375) kdsB 4175297..4176061 (-) 765 WP_141606709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FKZ69_RS19380 (FKZ69_19380) - 4176058..4176243 (-) 186 WP_003174668.1 Trm112 family protein -
  FKZ69_RS19385 (FKZ69_19385) lpxK 4176267..4177277 (-) 1011 WP_141606710.1 tetraacyldisaccharide 4'-kinase -
  FKZ69_RS19390 (FKZ69_19390) - 4177277..4177705 (-) 429 WP_027607319.1 ExbD/TolR family protein -
  FKZ69_RS19395 (FKZ69_19395) exbB 4177702..4178337 (-) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FKZ69_RS19400 (FKZ69_19400) comA 4178369..4180660 (-) 2292 WP_141607689.1 ComEC/Rec2 family competence protein Machinery gene
  FKZ69_RS19405 (FKZ69_19405) - 4180808..4181323 (+) 516 WP_027607322.1 DUF2062 domain-containing protein -
  FKZ69_RS19410 (FKZ69_19410) - 4181327..4182694 (-) 1368 WP_092488780.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22856.99 Da        Isoelectric Point: 7.3613

>NTDB_id=370724 FKZ69_RS19395 WP_027607320.1 4177702..4178337(-) (exbB) [Pseudomonas azotoformans strain P45A]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=370724 FKZ69_RS19395 WP_027607320.1 4177702..4178337(-) (exbB) [Pseudomonas azotoformans strain P45A]
GTGTGGGAATTGGTCAAATCTGGCGGCTGGATGATGTTGCCCATCATCCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAGCTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCAGCCATGGCGCCGTTGCTCGGCTTGCTGGGGACGGTACTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGCATCTCCAAGGCCCTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTTGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGTGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y1IKE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment