Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FKM99_RS24315 Genome accession   NZ_CP041202
Coordinates   3096172..3096699 (-) Length   175 a.a.
NCBI ID   WP_025592225.1    Uniprot ID   A0A7Y0XCG9
Organism   Vibrio parahaemolyticus strain Vb0624     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3091172..3101699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKM99_RS24300 (FKM99_24300) - 3091190..3093223 (-) 2034 WP_141180454.1 integrase -
  FKM99_RS24305 (FKM99_24305) - 3093216..3094778 (-) 1563 WP_141180455.1 site-specific integrase -
  FKM99_RS24310 (FKM99_24310) - 3094765..3096012 (-) 1248 WP_141180456.1 site-specific integrase -
  FKM99_RS24315 (FKM99_24315) ssb 3096172..3096699 (-) 528 WP_025592225.1 single-stranded DNA-binding protein Machinery gene
  FKM99_RS24320 (FKM99_24320) qstR 3096978..3097622 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  FKM99_RS24325 (FKM99_24325) galU 3097880..3098752 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19435.49 Da        Isoelectric Point: 4.9269

>NTDB_id=370470 FKM99_RS24315 WP_025592225.1 3096172..3096699(-) (ssb) [Vibrio parahaemolyticus strain Vb0624]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=370470 FKM99_RS24315 WP_025592225.1 3096172..3096699(-) (ssb) [Vibrio parahaemolyticus strain Vb0624]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0XCG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.829
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.617
  ssb Neisseria meningitidis MC58

48.023

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.486

Multiple sequence alignment