Detailed information
Bioinformatically predicted
Overview
| Name | ideA | Type | Regulator |
| Locus tag | FKM99_RS22315 | Genome accession | NZ_CP041202 |
| Coordinates | 2687317..2688000 (+) | Length | 227 a.a. |
| NCBI ID | WP_077671779.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain Vb0624 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2664245..2698676 | 2687317..2688000 | within | 0 |
Gene organization within MGE regions
Location: 2664245..2698676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FKM99_RS22195 (FKM99_22195) | - | 2664245..2665114 (+) | 870 | WP_077671794.1 | hypothetical protein | - |
| FKM99_RS22200 (FKM99_22200) | - | 2665101..2665763 (+) | 663 | WP_007105460.1 | DUF6475 domain-containing protein | - |
| FKM99_RS22205 (FKM99_22205) | - | 2665750..2666298 (+) | 549 | WP_025610846.1 | lytic transglycosylase domain-containing protein | - |
| FKM99_RS22210 (FKM99_22210) | - | 2666295..2666594 (+) | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| FKM99_RS22215 (FKM99_22215) | - | 2666591..2667124 (+) | 534 | WP_024008816.1 | FlhC family transcriptional regulator | - |
| FKM99_RS22220 (FKM99_22220) | eexS | 2667179..2667610 (+) | 432 | WP_077671793.1 | entry exclusion protein EexS | - |
| FKM99_RS22225 (FKM99_22225) | - | 2667643..2671212 (-) | 3570 | WP_077671792.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| FKM99_RS22230 (FKM99_22230) | - | 2671216..2672604 (-) | 1389 | WP_077671791.1 | conjugal transfer protein TraH | - |
| FKM99_RS22235 (FKM99_22235) | - | 2672607..2673551 (-) | 945 | WP_077671790.1 | thioredoxin family protein | - |
| FKM99_RS22240 (FKM99_22240) | - | 2673755..2674819 (-) | 1065 | WP_077671789.1 | hypothetical protein | - |
| FKM99_RS22245 (FKM99_22245) | - | 2675182..2675889 (-) | 708 | WP_077671788.1 | hypothetical protein | - |
| FKM99_RS22250 (FKM99_22250) | - | 2675979..2677046 (-) | 1068 | WP_077671787.1 | primase-helicase zinc-binding domain-containing protein | - |
| FKM99_RS22255 (FKM99_22255) | - | 2677138..2677479 (-) | 342 | WP_077671786.1 | plasmid-related protein | - |
| FKM99_RS22260 (FKM99_22260) | radC | 2677479..2677976 (-) | 498 | WP_077671785.1 | DNA repair protein RadC | - |
| FKM99_RS22265 (FKM99_22265) | - | 2678061..2679716 (-) | 1656 | WP_077671784.1 | VWA domain-containing protein | - |
| FKM99_RS22270 (FKM99_22270) | - | 2679786..2680226 (-) | 441 | WP_032469941.1 | hypothetical protein | - |
| FKM99_RS22275 (FKM99_22275) | - | 2680288..2681241 (-) | 954 | WP_077671783.1 | DUF3150 domain-containing protein | - |
| FKM99_RS22280 (FKM99_22280) | - | 2681340..2682107 (-) | 768 | WP_077671782.1 | WGR domain-containing protein | - |
| FKM99_RS22285 (FKM99_22285) | - | 2682107..2683066 (-) | 960 | WP_001959209.1 | AAA family ATPase | - |
| FKM99_RS22290 (FKM99_22290) | - | 2683276..2684292 (-) | 1017 | WP_077671781.1 | YqaJ viral recombinase family protein | - |
| FKM99_RS26920 | - | 2684354..2684497 (-) | 144 | WP_169674712.1 | hypothetical protein | - |
| FKM99_RS22295 (FKM99_22295) | bet | 2684579..2685397 (-) | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| FKM99_RS22300 (FKM99_22300) | - | 2685477..2685896 (-) | 420 | WP_141180370.1 | single-stranded DNA-binding protein | - |
| FKM99_RS22305 (FKM99_22305) | - | 2685912..2686238 (-) | 327 | WP_141180371.1 | plasmid-related protein | - |
| FKM99_RS22310 (FKM99_22310) | - | 2686606..2687208 (+) | 603 | WP_032081055.1 | hypothetical protein | - |
| FKM99_RS22315 (FKM99_22315) | ideA | 2687317..2688000 (+) | 684 | WP_077671779.1 | endonuclease | Regulator |
| FKM99_RS22320 (FKM99_22320) | - | 2688172..2689146 (-) | 975 | WP_077671778.1 | caspase family protein | - |
| FKM99_RS22325 (FKM99_22325) | - | 2689157..2689540 (-) | 384 | WP_077671777.1 | TIR domain-containing protein | - |
| FKM99_RS22335 (FKM99_22335) | - | 2689744..2690952 (+) | 1209 | Protein_2435 | IS4-like element ISVsa5 family transposase | - |
| FKM99_RS27340 (FKM99_22340) | - | 2690962..2691087 (-) | 126 | WP_001303004.1 | LysR family transcriptional regulator | - |
| FKM99_RS22345 (FKM99_22345) | gltS | 2691318..2692523 (-) | 1206 | WP_000599531.1 | sodium/glutamate symporter | - |
| FKM99_RS22350 (FKM99_22350) | - | 2692967..2693287 (+) | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| FKM99_RS22355 (FKM99_22355) | - | 2693280..2693666 (+) | 387 | WP_000460651.1 | hypothetical protein | - |
| FKM99_RS22360 (FKM99_22360) | - | 2693674..2694360 (+) | 687 | WP_001284954.1 | helix-turn-helix transcriptional regulator | - |
| FKM99_RS22365 (FKM99_22365) | tetR(B) | 2694338..2694961 (-) | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| FKM99_RS22370 (FKM99_22370) | tet(B) | 2695043..2696248 (+) | 1206 | WP_010446567.1 | tetracycline efflux MFS transporter Tet(B) | - |
| FKM99_RS22375 (FKM99_22375) | tetC | 2696361..2696954 (-) | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| FKM99_RS22380 (FKM99_22380) | - | 2697042..2697458 (+) | 417 | WP_000275180.1 | helix-turn-helix domain-containing protein | - |
| FKM99_RS22385 (FKM99_22385) | - | 2697468..2698676 (-) | 1209 | Protein_2445 | IS4-like element ISVsa5 family transposase | - |
Sequence
Protein
Download Length: 227 a.a. Molecular weight: 26505.62 Da Isoelectric Point: 7.1838
>NTDB_id=370457 FKM99_RS22315 WP_077671779.1 2687317..2688000(+) (ideA) [Vibrio parahaemolyticus strain Vb0624]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKSILGKSNCYVSDSC
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKSILGKSNCYVSDSC
Nucleotide
Download Length: 684 bp
>NTDB_id=370457 FKM99_RS22315 WP_077671779.1 2687317..2688000(+) (ideA) [Vibrio parahaemolyticus strain Vb0624]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
GTATTCTAGGTAAATCAAATTGCTATGTATCAGATAGCTGTTAA
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
GTATTCTAGGTAAATCAAATTGCTATGTATCAGATAGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ideA | Vibrio cholerae O1 str. 2010EL-1786 |
95.154 |
100 |
0.952 |
| dns | Aliivibrio fischeri ES114 |
50.87 |
100 |
0.515 |
| dns | Vibrio parahaemolyticus RIMD 2210633 |
51.092 |
100 |
0.515 |
| dns | Vibrio cholerae strain A1552 |
50.667 |
99.119 |
0.502 |
| dns | Campylobacter jejuni RM1221 |
37.778 |
99.119 |
0.374 |