Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BvL003_RS16960 Genome accession   NZ_CP041192
Coordinates   3455820..3456509 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain BvL03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3450820..3461509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS16925 (BvL003_17150) - 3451018..3451500 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BvL003_RS16930 (BvL003_17155) flgM 3451515..3451781 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  BvL003_RS16935 (BvL003_17160) - 3451851..3452270 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  BvL003_RS16940 (BvL003_17165) comFC 3452344..3453033 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  BvL003_RS16945 (BvL003_17170) - 3453039..3453323 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BvL003_RS16950 (BvL003_17175) comFA 3453381..3454766 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  BvL003_RS16955 (BvL003_17180) - 3454874..3455722 (-) 849 WP_003151387.1 DegV family protein -
  BvL003_RS16960 (BvL003_17185) degU 3455820..3456509 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BvL003_RS16965 (BvL003_17190) degS 3456586..3457749 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  BvL003_RS16970 (BvL003_17195) - 3457972..3458619 (+) 648 WP_060657503.1 YigZ family protein -
  BvL003_RS16975 (BvL003_17200) - 3458624..3459799 (+) 1176 WP_146275636.1 LCP family protein -
  BvL003_RS16980 (BvL003_17205) - 3459889..3460965 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=370396 BvL003_RS16960 WP_003219701.1 3455820..3456509(-) (degU) [Bacillus velezensis strain BvL03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=370396 BvL003_RS16960 WP_003219701.1 3455820..3456509(-) (degU) [Bacillus velezensis strain BvL03]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment