Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BvL003_RS16940 Genome accession   NZ_CP041192
Coordinates   3452344..3453033 (-) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus velezensis strain BvL03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447344..3458033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS16905 (BvL003_17130) fliW 3447435..3447866 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  BvL003_RS16910 (BvL003_17135) - 3447896..3448465 (-) 570 WP_003151397.1 DUF6470 family protein -
  BvL003_RS16915 (BvL003_17140) flgL 3448556..3449473 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BvL003_RS16920 (BvL003_17145) flgK 3449485..3451002 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  BvL003_RS16925 (BvL003_17150) - 3451018..3451500 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BvL003_RS16930 (BvL003_17155) flgM 3451515..3451781 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  BvL003_RS16935 (BvL003_17160) - 3451851..3452270 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  BvL003_RS16940 (BvL003_17165) comFC 3452344..3453033 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  BvL003_RS16945 (BvL003_17170) - 3453039..3453323 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BvL003_RS16950 (BvL003_17175) comFA 3453381..3454766 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  BvL003_RS16955 (BvL003_17180) - 3454874..3455722 (-) 849 WP_003151387.1 DegV family protein -
  BvL003_RS16960 (BvL003_17185) degU 3455820..3456509 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BvL003_RS16965 (BvL003_17190) degS 3456586..3457749 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=370394 BvL003_RS16940 WP_202980098.1 3452344..3453033(-) (comFC) [Bacillus velezensis strain BvL03]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=370394 BvL003_RS16940 WP_202980098.1 3452344..3453033(-) (comFC) [Bacillus velezensis strain BvL03]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment