Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BvL003_RS16950 Genome accession   NZ_CP041192
Coordinates   3453381..3454766 (-) Length   461 a.a.
NCBI ID   WP_146275634.1    Uniprot ID   -
Organism   Bacillus velezensis strain BvL03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448381..3459766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS16915 (BvL003_17140) flgL 3448556..3449473 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BvL003_RS16920 (BvL003_17145) flgK 3449485..3451002 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  BvL003_RS16925 (BvL003_17150) - 3451018..3451500 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BvL003_RS16930 (BvL003_17155) flgM 3451515..3451781 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  BvL003_RS16935 (BvL003_17160) - 3451851..3452270 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  BvL003_RS16940 (BvL003_17165) comFC 3452344..3453033 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  BvL003_RS16945 (BvL003_17170) - 3453039..3453323 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BvL003_RS16950 (BvL003_17175) comFA 3453381..3454766 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  BvL003_RS16955 (BvL003_17180) - 3454874..3455722 (-) 849 WP_003151387.1 DegV family protein -
  BvL003_RS16960 (BvL003_17185) degU 3455820..3456509 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BvL003_RS16965 (BvL003_17190) degS 3456586..3457749 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  BvL003_RS16970 (BvL003_17195) - 3457972..3458619 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52535.97 Da        Isoelectric Point: 10.1928

>NTDB_id=370395 BvL003_RS16950 WP_146275634.1 3453381..3454766(-) (comFA) [Bacillus velezensis strain BvL03]
MAEGASEFSEVRDFFYGRHLLRAEIPFSDQRINRFIEKEYITAEPSIIRRKNRYICQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=370395 BvL003_RS16950 WP_146275634.1 3453381..3454766(-) (comFA) [Bacillus velezensis strain BvL03]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGACATTTATTGAGAGCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACATCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATCACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCGTTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGTTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAGGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAGGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTAGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629
  comFA Latilactobacillus sakei subsp. sakei 23K

38.409

95.445

0.367

Multiple sequence alignment