Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NIBR502773_RS03315 Genome accession   NZ_CP041189
Coordinates   738675..740900 (-) Length   741 a.a.
NCBI ID   WP_227451608.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBRBAC000502773     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733675..745900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIBR502773_RS03280 (NIBR502773_03280) murB 734045..735064 (-) 1020 WP_115488831.1 UDP-N-acetylmuramate dehydrogenase -
  NIBR502773_RS03285 (NIBR502773_03285) - 735061..735525 (-) 465 WP_115488830.1 low molecular weight protein-tyrosine-phosphatase -
  NIBR502773_RS03290 (NIBR502773_03290) kdsB 735525..736289 (-) 765 WP_065927093.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NIBR502773_RS03295 (NIBR502773_03295) - 736286..736471 (-) 186 WP_003174668.1 Trm112 family protein -
  NIBR502773_RS03300 (NIBR502773_03300) lpxK 736495..737505 (-) 1011 WP_027607318.1 tetraacyldisaccharide 4'-kinase -
  NIBR502773_RS03305 (NIBR502773_03305) - 737505..737933 (-) 429 WP_027607319.1 biopolymer transporter ExbD -
  NIBR502773_RS03310 (NIBR502773_03310) exbB 737930..738565 (-) 636 WP_065940046.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NIBR502773_RS03315 (NIBR502773_03315) comA 738675..740900 (-) 2226 WP_227451608.1 ComEC/Rec2 family competence protein Machinery gene
  NIBR502773_RS03320 (NIBR502773_03320) - 741036..741551 (+) 516 WP_065940048.1 DUF2062 domain-containing protein -
  NIBR502773_RS03325 (NIBR502773_03325) - 741555..742922 (-) 1368 WP_141155363.1 sensor histidine kinase -
  NIBR502773_RS03330 (NIBR502773_03330) - 742912..743640 (-) 729 WP_141155364.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80491.47 Da        Isoelectric Point: 10.4368

>NTDB_id=370298 NIBR502773_RS03315 WP_227451608.1 738675..740900(-) (comA) [Pseudomonas sp. NIBRBAC000502773]
MKTGMFALALGLLALRFLPALPPTGWLIAMLVLALMLLPFRTSPLAFFLLGLSWACISAQWALDDRLRPVLDGQTRWLEG
RVTGLPQQTETGVRFELADSQARNARLPKRIRVFWHGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARHAWRDTVRQRLMAVDAHGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VALLARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFMAVAVLVLGFGGRLGPWSVWQAWTRPQCLIAVGLFPVLLVLGLPVSVSAPLANLVAVPWISLVVLPLAL
LGSALLPLPYAGEGLLWLAGGALDGLFRGLAWLAGQMPAWIPAEVPLGYWLISLVGAVLLLLPSGVPFRPLGLPLLLLAV
FPPRELVPHGRVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGTVDLGARVVVPALKKLGVGTLDMMLLSHADADHAGGA
SAVARGLPIRRVVGGETEGLPAFLATQPCVSGERWEWDGVAFELWQWPDAIDGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLASSLAVRTDWLQSPHHGSRSSSSWPFLQRLAPTSVLISRGRGNAFGHPHPQVVERYQRLGSQIYDSAELGAVRVQL
GAFQPPTVARSQRRFWRETLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=370298 NIBR502773_RS03315 WP_227451608.1 738675..740900(-) (comA) [Pseudomonas sp. NIBRBAC000502773]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGTTGCTTGCCTTGCGCTTTCTACCGGCGCTGCCGCCGACGGGATGGCT
GATAGCCATGCTGGTGCTTGCATTGATGCTATTGCCCTTTCGTACGTCGCCACTGGCATTTTTCCTGTTGGGCTTGAGCT
GGGCCTGCATCAGTGCGCAGTGGGCGCTGGATGATCGACTACGGCCGGTGCTGGATGGCCAGACGCGATGGCTGGAAGGC
CGTGTAACCGGGTTACCGCAGCAGACAGAGACGGGCGTGCGTTTTGAGCTGGCCGACAGCCAGGCGCGCAACGCCCGGTT
GCCCAAGCGCATCCGGGTGTTTTGGCACGGCGGGCCGCCGGTACGCAGTGGCGAGCGCTGGCGTCTGGCCGTGACGCTGA
AACGGCCTGCCGGGCTGCTCAATTTTCATGGTTTCGATCAGGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGC
TCGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGTCATGCCTGGCGTGACACTGTTCGCCAACGCCTGATGGCGGTGGA
CGCCCACGGCCGCGAGGCGGGCCTGGCGGCTTTGGTGCTGGGGGATGGCTCCGGGCTGGCGGCCGAAGACTGGCAGGTGT
TGCAGGACACTGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGGTTG
GTCGCGCTACTTGCACGCTACGGCTGCTGGCCCCGTACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCGTTTGCCGC
TGCGCTGGGGTACGGCCTGCTGGCAGGGTTTGGCGTGCCGGTGCAACGGGCCTGCGTCATGGTGGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGTCATCTGGGCTTCTGGTGGCCGTTGTTGCTGGCACTCAATGGCGTGCTGATCCTGGAGCCACTG
GCCAGCCTGCAACCGGGATTCTGGCTGTCCTTCATGGCTGTCGCGGTGCTGGTCCTGGGATTTGGGGGGCGGTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACACGTCCCCAGTGCTTGATTGCCGTTGGTCTGTTTCCTGTGTTGCTGGTGCTCGGCT
TGCCCGTCAGCGTCAGTGCGCCGCTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTG
CTGGGGAGCGCATTGTTGCCGCTGCCGTATGCCGGGGAGGGTTTGTTGTGGCTGGCGGGCGGGGCGCTTGACGGGTTGTT
CCGGGGCTTGGCATGGCTCGCTGGGCAAATGCCTGCCTGGATACCGGCCGAGGTGCCCCTGGGTTACTGGCTGATCAGCC
TGGTCGGCGCGGTGCTGTTACTGCTGCCCAGCGGCGTGCCGTTTCGGCCCCTGGGCTTGCCGCTGCTGTTGTTGGCCGTG
TTTCCACCCCGCGAGCTCGTGCCCCATGGGCGGGTGGAGGTGGTGCAGCTGGATGTCGGTCAAGGTCAGGCCTTGATCCT
GCGTACCCGCCATCACACGTTGCTCTACGATGCCGGCCCGCGTTCGGGGACGGTTGACCTCGGTGCCCGTGTGGTAGTGC
CTGCGTTGAAAAAGCTCGGCGTCGGGACGCTGGATATGATGCTGCTGAGCCACGCCGACGCCGATCATGCCGGTGGGGCG
TCGGCTGTTGCCCGAGGGTTGCCGATCCGGCGTGTCGTGGGCGGTGAAACCGAGGGGTTGCCCGCGTTTCTCGCCACCCA
GCCCTGTGTCAGCGGCGAACGGTGGGAGTGGGACGGTGTGGCATTCGAGCTGTGGCAGTGGCCTGATGCGATTGATGGCA
ATCCCAAGTCCTGTGTTCTGCAGGTCCAGGCCAATGGTGAGCGGCTGCTGCTCACGGGGGATATTGATCGGGCTGCCGAA
CGAGCATTTCTCGCGTCTTCGTTGGCCGTGCGCACCGATTGGCTGCAATCCCCTCACCATGGCAGCCGCAGTTCGTCGTC
CTGGCCTTTTCTACAGCGGCTGGCGCCCACGTCGGTGCTGATTTCCCGTGGGCGTGGCAATGCGTTCGGCCATCCTCACC
CGCAGGTGGTGGAGCGCTACCAGCGACTGGGCAGCCAGATATACGACAGTGCCGAGCTGGGCGCGGTGCGTGTGCAATTA
GGGGCTTTCCAGCCACCGACTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAACGTTACCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-646)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.556

97.166

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.687

100

0.382

Multiple sequence alignment