Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NIBR502773_RS03310 Genome accession   NZ_CP041189
Coordinates   737930..738565 (-) Length   211 a.a.
NCBI ID   WP_065940046.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBRBAC000502773     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732930..743565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIBR502773_RS03275 (NIBR502773_03275) - 733310..733981 (+) 672 WP_115488832.1 Bax inhibitor-1/YccA family protein -
  NIBR502773_RS03280 (NIBR502773_03280) murB 734045..735064 (-) 1020 WP_115488831.1 UDP-N-acetylmuramate dehydrogenase -
  NIBR502773_RS03285 (NIBR502773_03285) - 735061..735525 (-) 465 WP_115488830.1 low molecular weight protein-tyrosine-phosphatase -
  NIBR502773_RS03290 (NIBR502773_03290) kdsB 735525..736289 (-) 765 WP_065927093.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NIBR502773_RS03295 (NIBR502773_03295) - 736286..736471 (-) 186 WP_003174668.1 Trm112 family protein -
  NIBR502773_RS03300 (NIBR502773_03300) lpxK 736495..737505 (-) 1011 WP_027607318.1 tetraacyldisaccharide 4'-kinase -
  NIBR502773_RS03305 (NIBR502773_03305) - 737505..737933 (-) 429 WP_027607319.1 biopolymer transporter ExbD -
  NIBR502773_RS03310 (NIBR502773_03310) exbB 737930..738565 (-) 636 WP_065940046.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NIBR502773_RS03315 (NIBR502773_03315) comA 738675..740900 (-) 2226 WP_227451608.1 ComEC/Rec2 family competence protein Machinery gene
  NIBR502773_RS03320 (NIBR502773_03320) - 741036..741551 (+) 516 WP_065940048.1 DUF2062 domain-containing protein -
  NIBR502773_RS03325 (NIBR502773_03325) - 741555..742922 (-) 1368 WP_141155363.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.96 Da        Isoelectric Point: 7.3613

>NTDB_id=370297 NIBR502773_RS03310 WP_065940046.1 737930..738565(-) (exbB) [Pseudomonas sp. NIBRBAC000502773]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=370297 NIBR502773_RS03310 WP_065940046.1 737930..738565(-) (exbB) [Pseudomonas sp. NIBRBAC000502773]
GTGTGGGAATTGGTCAAATCTGGCGGCTGGATGATGTTGCCCATCATCCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCACCCCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAGCTGGAACGCTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGTTTGCTGGGGACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCCGTGCTGGCCGGCGGCATCTCCAAGGCCCTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment