Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FJQ89_RS17330 Genome accession   NZ_CP041185
Coordinates   3957525..3958043 (-) Length   172 a.a.
NCBI ID   WP_071075050.1    Uniprot ID   A0A4Y6RHB0
Organism   Janthinobacterium tructae strain SNU WT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3952525..3963043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS17315 (FJQ89_17315) - 3955538..3956317 (-) 780 WP_141171065.1 acetoin reductase -
  FJQ89_RS17320 (FJQ89_17320) - 3956606..3957022 (+) 417 WP_141171066.1 hypothetical protein -
  FJQ89_RS17325 (FJQ89_17325) - 3957137..3957442 (+) 306 WP_141171067.1 hypothetical protein -
  FJQ89_RS17330 (FJQ89_17330) ssb 3957525..3958043 (-) 519 WP_071075050.1 single-stranded DNA-binding protein Machinery gene
  FJQ89_RS17335 (FJQ89_17335) uvrA 3958425..3961274 (+) 2850 WP_141171068.1 excinuclease ABC subunit UvrA -
  FJQ89_RS17340 (FJQ89_17340) - 3961338..3961955 (-) 618 WP_141171069.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18249.40 Da        Isoelectric Point: 5.9416

>NTDB_id=370275 FJQ89_RS17330 WP_071075050.1 3957525..3958043(-) (ssb) [Janthinobacterium tructae strain SNU WT1]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGGGGYDAPAPRQAPAPRPAPAPAPRPAPKPA
PNFSDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=370275 FJQ89_RS17330 WP_071075050.1 3957525..3958043(-) (ssb) [Janthinobacterium tructae strain SNU WT1]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAATACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACGCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGTCGCTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGCGGCGGCGGTGGTGGTGGCGGCT
ACGACGCCCCGGCCCCGCGCCAGGCACCCGCTCCGCGTCCAGCCCCGGCACCGGCACCACGCCCGGCACCGAAGCCAGCA
CCGAACTTCTCGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6RHB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

52.542

100

0.541
  ssb Neisseria meningitidis MC58

51.685

100

0.535
  ssb Vibrio cholerae strain A1552

50.838

100

0.529
  ssb Glaesserella parasuis strain SC1401

50

100

0.529

Multiple sequence alignment