Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FJQ89_RS14715 Genome accession   NZ_CP041185
Coordinates   3361293..3362351 (-) Length   352 a.a.
NCBI ID   WP_141170716.1    Uniprot ID   -
Organism   Janthinobacterium tructae strain SNU WT1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3356293..3367351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS14705 (FJQ89_14705) - 3357345..3360299 (-) 2955 WP_141170715.1 ribonucleoside-diphosphate reductase subunit alpha -
  FJQ89_RS14710 (FJQ89_14710) ampD 3360682..3361293 (-) 612 WP_141172810.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FJQ89_RS14715 (FJQ89_14715) pilR 3361293..3362351 (-) 1059 WP_141170716.1 sigma-54 dependent transcriptional regulator Regulator
  FJQ89_RS14720 (FJQ89_14720) - 3362469..3362729 (-) 261 WP_071075508.1 PP0621 family protein -
  FJQ89_RS14725 (FJQ89_14725) ccsA 3362726..3363529 (-) 804 WP_071075507.1 cytochrome c biogenesis protein CcsA -
  FJQ89_RS14730 (FJQ89_14730) - 3363858..3364397 (+) 540 WP_141170717.1 hypothetical protein -
  FJQ89_RS14735 (FJQ89_14735) - 3364464..3365408 (-) 945 WP_141172811.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37775.14 Da        Isoelectric Point: 9.4840

>NTDB_id=370271 FJQ89_RS14715 WP_141170716.1 3361293..3362351(-) (pilR) [Janthinobacterium tructae strain SNU WT1]
MSSPSLSPHTVTAAGMPPAPQLSGNSLPMQALRAQIGRIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIAVNCG
AIPEALMEAEFFGCRQGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSTDEAVDVRILC
ASQHGLARGVAAGTFRQDLFYRLHVIELALPPLRERRGDLQVLCEVILARLAPRQAVSLAPPVLAALAAYAFPGNVRELE
NILERALAFADGGVIALDALALPSVAGAMPLRAPPALPDLPERQLCLPGMAAYGVPPALPLDMYLRQAERDMIMQALVQA
RYHRARAARQLGLSVRQLRYRMQKLTIQEALP

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=370271 FJQ89_RS14715 WP_141170716.1 3361293..3362351(-) (pilR) [Janthinobacterium tructae strain SNU WT1]
ATGTCCAGTCCCAGCCTCAGCCCGCATACCGTGACCGCCGCCGGCATGCCACCGGCGCCTCAACTGAGCGGCAACTCCCT
GCCCATGCAGGCGCTGCGTGCGCAGATCGGCCGCATCGCCCGCTGTGGTGCGCCGGTGGCCATCCGCGGCGAATCGGGCA
CGGGCAAGGAATTGGCGGCGCGCGCCATCCATGCGCAGGGTGCGCGCGCCAGCTTCCCTTTTATTGCCGTCAACTGCGGC
GCGATTCCCGAAGCGTTGATGGAGGCCGAATTCTTCGGCTGCCGCCAGGGCGCCTATACGGGCGCGCTGCATGAGCGCCA
GGGATTGTTCCAGGCGGCCCATGGCGGCAGTTTGCTGCTCGATGAAGTCGACGATCTGCCGCTGGCCATGCAGGTCAAGC
TGTTGCGCGTGCTGCAGGAGCGGCGCGTGCGCAAGCTGGGCGGTAGTACTGACGAGGCCGTCGACGTGCGCATCCTCTGC
GCCAGCCAGCATGGCCTGGCGCGCGGCGTGGCCGCCGGCACGTTTCGCCAGGATCTGTTTTACCGCCTCCATGTGATCGA
GCTGGCGCTGCCGCCGTTGCGCGAGCGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGCGTCTGGCGCCAC
GCCAGGCCGTGAGCCTGGCGCCGCCGGTGCTGGCGGCTTTGGCCGCGTATGCGTTTCCCGGCAATGTGCGCGAACTGGAA
AATATACTGGAGCGGGCGCTGGCCTTTGCCGACGGCGGCGTGATTGCACTCGACGCGCTGGCCTTGCCGTCAGTGGCGGG
CGCCATGCCGCTGCGGGCGCCGCCGGCATTGCCGGACTTGCCTGAGCGGCAACTGTGCCTGCCCGGCATGGCGGCATATG
GCGTGCCGCCCGCCTTGCCGCTGGACATGTATTTACGCCAGGCCGAGCGCGACATGATCATGCAGGCGCTGGTGCAGGCG
CGCTATCACCGCGCACGGGCGGCGCGCCAGCTGGGCCTGAGCGTGCGCCAGCTGCGTTACCGCATGCAGAAATTGACGAT
ACAGGAAGCGCTACCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(305-345)

Sigma-54 interaction domain (Sigma54_activat)

(23-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.642

95.17

0.491
  pilR Acinetobacter baumannii strain A118

43.844

94.602

0.415
  luxO Vibrio cholerae strain A1552

39.264

92.614

0.364

Multiple sequence alignment