Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GCO85_RS04530 Genome accession   NZ_CP048618
Coordinates   990343..992169 (-) Length   608 a.a.
NCBI ID   WP_061634328.1    Uniprot ID   -
Organism   Legionella pneumophila strain ERS1305867     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985343..997169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS04495 (GCO85_04505) - 985372..987324 (+) 1953 WP_061636307.1 heme lyase CcmF/NrfE family subunit -
  GCO85_RS04500 (GCO85_04510) - 987321..987854 (+) 534 WP_011945972.1 DsbE family thiol:disulfide interchange protein -
  GCO85_RS04505 (GCO85_04515) - 987854..988255 (+) 402 WP_010946599.1 cytochrome c-type biogenesis protein -
  GCO85_RS04510 (GCO85_04520) - 988248..988934 (+) 687 WP_011945973.1 tetratricopeptide repeat protein -
  GCO85_RS04515 (GCO85_04525) - 988924..989127 (+) 204 WP_011213332.1 dodecin -
  GCO85_RS04520 (GCO85_04530) - 989183..989587 (+) 405 WP_010946601.1 DUF4156 domain-containing protein -
  GCO85_RS04525 (GCO85_04535) - 989782..990333 (-) 552 WP_011945974.1 DNA-3-methyladenine glycosylase -
  GCO85_RS04530 (GCO85_04540) recQ 990343..992169 (-) 1827 WP_061634328.1 DNA helicase RecQ Machinery gene
  GCO85_RS04535 (GCO85_04545) - 992283..993437 (+) 1155 WP_011945976.1 acyl-CoA dehydrogenase family protein -
  GCO85_RS04540 (GCO85_04550) - 993454..994230 (+) 777 WP_011215046.1 enoyl-CoA hydratase-related protein -
  GCO85_RS04545 (GCO85_04555) - 994233..995291 (+) 1059 WP_014841242.1 enoyl-CoA hydratase/isomerase family protein -
  GCO85_RS04550 (GCO85_04560) - 995456..996322 (-) 867 WP_015444706.1 Lpg0189 family type II secretion system effector -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 68978.05 Da        Isoelectric Point: 8.1488

>NTDB_id=370090 GCO85_RS04530 WP_061634328.1 990343..992169(-) (recQ) [Legionella pneumophila strain ERS1305867]
MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRRGVGIVVSPLIALME
DQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVVPKTNAVKQLNLFLQSDTQQSGI
IYCGTRHTVEHLTAKLQELGLKARAYHAGLSHTERREVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGY
YQETGRAGRDGLPAKALLLYDAADSARLRSWIMYIPLDEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEPSHTECKNC
DVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQSGHEHLSTFGIGKDKSANYWKHLAWQLIHKD
YCLQDMNHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKLRALRRQLADEENKPPFMIF
SDATLHEMAHLKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEVE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=370090 GCO85_RS04530 WP_061634328.1 990343..992169(-) (recQ) [Legionella pneumophila strain ERS1305867]
ATGGGAACTTTAGCGCAACCATCTTTTATAAATCCAAACGCATTAGCTGTTTTAAAAAAATATTTTGGATTTGATTCCTT
CAGACCTCCTCAGGAAAAAATAATTGAGGATGTCATTTCTGGGGAAGATGTACTGGTTTTGATGCCTACTGGAGGGGGAA
AATCGCTTTGCTATCAAATTCCAGCCATTGTTCGCCGTGGTGTTGGCATTGTAGTATCTCCTTTAATCGCGTTAATGGAA
GATCAAGTAACCGCTCTCAAACTGCAGGGTATTCGTGCGGCTTACTACAACTCATCCTTAACCGCCGAAGAGGCTAGAAA
TGTATTAAATCAATTACATCATAATGAATTGGATTTACTCTATATTGCTCCAGAACGTCTTATTAGTACCTCGTTTCTGG
ATCGACTGTCAGAATGTACTATCTCTTTATTTGCTATCGATGAAGCACACTGTATTTCACAATGGGGACATGATTTTCGA
CCTGAATACGCCTGTTTAGGTTTACTGAAAACTAACTTTCCTGACATTCCTATGATTGCTCTGACAGCTACTGCCGATAA
GCAAACACGTGAGGATATTGTTACCAAGTTGAATTATCAACCCAAAAAATACGTTGTTTCATTCAATCGACCGAATATCC
ATTACAAAGTAGTTCCTAAAACAAATGCAGTGAAGCAATTAAATCTGTTTTTACAATCTGATACCCAGCAATCCGGAATT
ATTTATTGTGGAACCCGCCATACAGTCGAACATCTTACAGCGAAATTACAAGAACTTGGATTGAAAGCACGCGCTTATCA
TGCAGGCCTGTCTCATACGGAGCGGCGTGAGGTGCAAAACCTTTTCAGATACGATCGCATTGATATTGTGGTAGCTACAA
TTGCTTTTGGAATGGGTATTGACAAGCCTAATGTTCGCTTTGTTGTTCACCATGATTTACCCAAAAGCATCGAAGGTTAC
TACCAGGAAACAGGTCGTGCAGGACGTGACGGATTACCGGCCAAGGCCCTTCTTCTTTATGATGCTGCGGATAGTGCCCG
TTTGCGGTCCTGGATAATGTACATCCCTCTTGATGAGCAAAGACATATAGAAACCAATAAATTAAATCATATGCTTGCTT
TTGCTGAAGCGTCGCATTGTCGTCGTCAAATTTTATTACGCTATTTTGATGAACCTTCTCATACAGAATGTAAAAACTGT
GATGTCTGCGATAACCCACCGCAAACAGCCGATGCAACAGAAGATGCGCAAAAATTTTTATCGTGTATTTATCGATTAAA
ACAAAGCTATGGTTTAACACATACTATTGATGTCCTGAGAGGTAGTTTATCTGAAAAAATCAAGCAGTCTGGGCATGAGC
ATTTAAGTACTTTTGGAATTGGGAAAGATAAATCTGCCAATTATTGGAAGCATCTTGCCTGGCAATTAATTCATAAAGAT
TATTGTTTACAGGACATGAATCATTTTAATGTGTTACGCTTGACTCCAAAAGCGATTCCCCTCCTAAAAGGTGAAGAGAG
TATTTCATTAACCATTCCTAACAATGATCTGAATAGCAGTAAAAAGAAAGGCAAGCAGAATCCTTCCTTTAAACCTGAAA
GTAACCCATTATTTGAAAAACTTCGTGCGTTAAGACGTCAGTTGGCCGATGAAGAAAACAAACCACCATTTATGATATTC
AGTGATGCTACATTACATGAAATGGCCCACTTAAAACCCAAAAACAGTAAGCAACTACTGAATGTATCTGGGGTTGGGCA
ACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAGAAGTCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(231-330)

HRDC domain (HRDC)

(536-601)

RecQ zinc-binding (RecQ_Zn_bind)

(343-403)

RQC domain (RQC)

(406-515)

DEAD/DEAH box helicase (DEAD)

(29-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.196

98.191

0.385

Multiple sequence alignment