Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FJN13_RS00780 | Genome accession | NZ_CP041169 |
| Coordinates | 173221..173811 (+) | Length | 196 a.a. |
| NCBI ID | WP_012516753.1 | Uniprot ID | F2G3Q0 |
| Organism | Alteromonas mediterranea strain PT11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 134084..181344 | 173221..173811 | within | 0 |
Gene organization within MGE regions
Location: 134084..181344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FJN13_RS00605 (FJN13_00605) | - | 134737..136074 (+) | 1338 | WP_020745182.1 | magnesium transporter | - |
| FJN13_RS00610 (FJN13_00610) | rarD | 136262..137176 (+) | 915 | WP_080652882.1 | EamA family transporter RarD | - |
| FJN13_RS00615 (FJN13_00615) | - | 137202..138482 (-) | 1281 | WP_012516719.1 | diguanylate cyclase | - |
| FJN13_RS00620 (FJN13_00620) | uvrD | 138525..140696 (-) | 2172 | WP_012516720.1 | DNA helicase II | - |
| FJN13_RS00625 (FJN13_00625) | cysE | 141125..141931 (+) | 807 | WP_012516721.1 | serine O-acetyltransferase | - |
| FJN13_RS00630 (FJN13_00630) | - | 142021..142761 (-) | 741 | WP_141151395.1 | HAD-IA family hydrolase | - |
| FJN13_RS00635 (FJN13_00635) | xerC | 142783..143703 (-) | 921 | WP_071958326.1 | tyrosine recombinase XerC | - |
| FJN13_RS00640 (FJN13_00640) | - | 143709..144404 (-) | 696 | WP_071950501.1 | DUF484 family protein | - |
| FJN13_RS00645 (FJN13_00645) | dapF | 144401..145231 (-) | 831 | WP_012516725.1 | diaminopimelate epimerase | - |
| FJN13_RS00650 (FJN13_00650) | lysA | 145267..146517 (-) | 1251 | WP_012516726.1 | diaminopimelate decarboxylase | - |
| FJN13_RS00655 (FJN13_00655) | lptM | 146517..146714 (-) | 198 | WP_231125109.1 | LPS translocon maturation chaperone LptM | - |
| FJN13_RS00660 (FJN13_00660) | - | 146766..147833 (-) | 1068 | WP_015065947.1 | MJ1255/VC2487 family glycosyltransferase | - |
| FJN13_RS00665 (FJN13_00665) | - | 147835..148347 (-) | 513 | WP_071950502.1 | phosphatase PAP2 family protein | - |
| FJN13_RS00670 (FJN13_00670) | rraA | 148699..149184 (+) | 486 | WP_071950503.1 | ribonuclease E activity regulator RraA | - |
| FJN13_RS00675 (FJN13_00675) | - | 149289..150098 (-) | 810 | WP_141151396.1 | S1/P1 nuclease | - |
| FJN13_RS00680 (FJN13_00680) | - | 150101..150733 (-) | 633 | WP_071950505.1 | flavin prenyltransferase UbiX | - |
| FJN13_RS00685 (FJN13_00685) | mpl | 150807..152165 (-) | 1359 | WP_141151397.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| FJN13_RS00690 (FJN13_00690) | - | 152479..153456 (+) | 978 | WP_071968024.1 | class 1 fructose-bisphosphatase | - |
| FJN13_RS00695 (FJN13_00695) | ppa | 153620..154150 (+) | 531 | WP_012516736.1 | inorganic diphosphatase | - |
| FJN13_RS00700 (FJN13_00700) | - | 154293..154790 (+) | 498 | WP_141151398.1 | DUF3299 domain-containing protein | - |
| FJN13_RS00705 (FJN13_00705) | - | 154809..155507 (-) | 699 | WP_015065954.1 | 2OG-Fe(II) oxygenase | - |
| FJN13_RS00710 (FJN13_00710) | - | 155530..155949 (-) | 420 | WP_071958334.1 | acyl-CoA thioesterase | - |
| FJN13_RS00715 (FJN13_00715) | - | 156134..157636 (+) | 1503 | WP_141151399.1 | Hsp70 family protein | - |
| FJN13_RS00720 (FJN13_00720) | - | 157737..157991 (+) | 255 | WP_141151400.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| FJN13_RS00725 (FJN13_00725) | - | 157978..158262 (+) | 285 | WP_181406647.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FJN13_RS18830 | - | 158333..158500 (-) | 168 | WP_015065957.1 | hypothetical protein | - |
| FJN13_RS00730 (FJN13_00730) | uvrA | 158704..161535 (-) | 2832 | WP_020742666.1 | excinuclease ABC subunit UvrA | - |
| FJN13_RS00735 (FJN13_00735) | - | 162132..163469 (+) | 1338 | WP_141151402.1 | MFS transporter | - |
| FJN13_RS00740 (FJN13_00740) | - | 163538..164122 (+) | 585 | WP_141151403.1 | HAD family hydrolase | - |
| FJN13_RS00745 (FJN13_00745) | - | 164197..164811 (-) | 615 | WP_232367921.1 | hypothetical protein | - |
| FJN13_RS00750 (FJN13_00750) | - | 165023..165886 (+) | 864 | WP_071950517.1 | alpha/beta hydrolase | - |
| FJN13_RS00755 (FJN13_00755) | - | 166318..167319 (-) | 1002 | WP_071950518.1 | LacI family DNA-binding transcriptional regulator | - |
| FJN13_RS00760 (FJN13_00760) | - | 167646..168668 (+) | 1023 | WP_141151404.1 | aldose epimerase family protein | - |
| FJN13_RS00765 (FJN13_00765) | - | 168838..169893 (+) | 1056 | WP_141151405.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| FJN13_RS00770 (FJN13_00770) | galK | 169886..171025 (+) | 1140 | WP_141151406.1 | galactokinase | - |
| FJN13_RS00775 (FJN13_00775) | - | 171394..172956 (+) | 1563 | WP_141151407.1 | sodium/sugar symporter | - |
| FJN13_RS00780 (FJN13_00780) | ssb | 173221..173811 (+) | 591 | WP_012516753.1 | single-stranded DNA-binding protein | Machinery gene |
| FJN13_RS00785 (FJN13_00785) | - | 174021..174971 (+) | 951 | WP_141151408.1 | hypothetical protein | - |
| FJN13_RS00790 (FJN13_00790) | - | 175233..176519 (+) | 1287 | WP_181406648.1 | alpha/beta hydrolase family protein | - |
| FJN13_RS00795 (FJN13_00795) | - | 176655..178784 (-) | 2130 | WP_141151410.1 | alpha-galactosidase | - |
| FJN13_RS00800 (FJN13_00800) | - | 179056..180513 (-) | 1458 | WP_071950526.1 | SLC5 family protein | - |
| FJN13_RS00805 (FJN13_00805) | - | 180533..181279 (-) | 747 | WP_141151411.1 | SapC family protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21299.23 Da Isoelectric Point: 4.9562
>NTDB_id=370072 FJN13_RS00780 WP_012516753.1 173221..173811(+) (ssb) [Alteromonas mediterranea strain PT11]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 591 bp
>NTDB_id=370072 FJN13_RS00780 WP_012516753.1 173221..173811(+) (ssb) [Alteromonas mediterranea strain PT11]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACTACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAAGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTCTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACTACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAAGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.571 |
| ssb | Vibrio cholerae strain A1552 |
53.731 |
100 |
0.551 |
| ssb | Neisseria meningitidis MC58 |
46.392 |
98.98 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.392 |
98.98 |
0.459 |