Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3M73_RS12820 Genome accession   NZ_CP048605
Coordinates   2743624..2744160 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PapRG-06-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2738624..2749160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M73_RS12800 (G3M73_12800) soxR 2740353..2740817 (-) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -
  G3M73_RS12805 (G3M73_12805) soxS 2740903..2741226 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  G3M73_RS12810 (G3M73_12810) pdeC 2741232..2742815 (-) 1584 WP_001626466.1 c-di-GMP phosphodiesterase PdeC -
  G3M73_RS12815 (G3M73_12815) yjcB 2743244..2743525 (+) 282 WP_001295689.1 YjcB family protein -
  G3M73_RS12820 (G3M73_12820) ssb 2743624..2744160 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G3M73_RS12825 (G3M73_12825) uvrA 2744415..2747237 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  G3M73_RS12830 (G3M73_12830) yjbR 2747272..2747628 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  G3M73_RS12835 (G3M73_12835) yjbQ 2747632..2748048 (-) 417 WP_163425282.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G3M73_RS12840 (G3M73_12840) aphA 2748159..2748872 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=369951 G3M73_RS12820 WP_000168305.1 2743624..2744160(-) (ssb) [Escherichia coli strain PapRG-06-5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=369951 G3M73_RS12820 WP_000168305.1 2743624..2744160(-) (ssb) [Escherichia coli strain PapRG-06-5]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489