Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGA12_RS02455 Genome accession   NZ_CP041153
Coordinates   540803..541471 (+) Length   222 a.a.
NCBI ID   WP_033538788.1    Uniprot ID   -
Organism   Shewanella marisflavi strain ECSMB14101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 535803..546471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGA12_RS02445 (FGA12_02445) uvrA 536333..539158 (-) 2826 WP_033538790.1 excinuclease ABC subunit UvrA -
  FGA12_RS02450 (FGA12_02450) - 539361..540728 (+) 1368 WP_033538789.1 MFS transporter -
  FGA12_RS02455 (FGA12_02455) ssb 540803..541471 (+) 669 WP_033538788.1 single-stranded DNA-binding protein Machinery gene
  FGA12_RS02460 (FGA12_02460) dusA 541655..542644 (+) 990 WP_033538787.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FGA12_RS02465 (FGA12_02465) - 542941..543219 (+) 279 WP_033538786.1 hypothetical protein -
  FGA12_RS02470 (FGA12_02470) - 543382..543588 (+) 207 WP_033538785.1 PspC domain-containing protein -
  FGA12_RS02475 (FGA12_02475) - 543607..543966 (+) 360 WP_033538784.1 hypothetical protein -
  FGA12_RS02480 (FGA12_02480) - 543980..544717 (-) 738 WP_033538783.1 enoyl-CoA hydratase -
  FGA12_RS02485 (FGA12_02485) - 544767..545234 (+) 468 WP_033538782.1 copper chaperone PCu(A)C -
  FGA12_RS02490 (FGA12_02490) - 545247..546218 (+) 972 WP_033538781.1 DUF2333 family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24247.65 Da        Isoelectric Point: 5.9284

>NTDB_id=369941 FGA12_RS02455 WP_033538788.1 540803..541471(+) (ssb) [Shewanella marisflavi strain ECSMB14101]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQMQERTEWHNIVMYRRLAEIAGEYLKKGSKVYLE
GKLQTSKWQDQQTGQDRYKTEINVNEMQMLDSRAQGQGGQGGQQGYGAPQQNQYAPQQSAPAPRPQPQSQPQPQSSGAAP
QGGYGAPQQAAPQQGYGAPAAPAYAPKPQAAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 669 bp        

>NTDB_id=369941 FGA12_RS02455 WP_033538788.1 540803..541471(+) (ssb) [Shewanella marisflavi strain ECSMB14101]
ATGGCCAGTCGTGGTGTCAATAAGGTAATTTTGGTCGGTAACTTAGGGAAAGATCCCGAGGTTCGTTACATGCCAAACGG
CAACGCCGTAGCCAACTTTACAGTGGCGACCAGTGAGTCTTGGAAAGACCAACAAGGTCAGATGCAAGAACGTACAGAGT
GGCACAACATTGTAATGTACCGTCGTCTTGCTGAGATCGCCGGTGAGTACCTGAAGAAGGGCTCAAAAGTTTATCTTGAA
GGCAAGCTGCAGACCAGCAAGTGGCAAGATCAGCAGACAGGCCAAGATCGCTATAAGACAGAGATCAATGTCAACGAGAT
GCAGATGCTTGATAGCCGTGCTCAAGGTCAAGGCGGTCAAGGTGGTCAGCAAGGTTATGGTGCACCGCAGCAGAACCAGT
ATGCGCCTCAGCAATCGGCTCCAGCGCCACGTCCACAACCACAATCACAACCACAGCCACAGTCATCGGGCGCAGCGCCT
CAGGGTGGATATGGTGCGCCGCAGCAAGCGGCACCACAGCAAGGTTATGGCGCACCAGCGGCACCAGCCTACGCTCCTAA
GCCACAGGCGGCGCCGCAACAGGCACCGCAGCAACGTCCTGCGCCGCAACCACAGCAAAATTTCACGCCGGATCTGGATG
ATGGCTGGGACGACGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.78

100

0.509
  ssb Glaesserella parasuis strain SC1401

48.198

100

0.482
  ssb Neisseria gonorrhoeae MS11

46.083

97.748

0.45
  ssb Neisseria meningitidis MC58

45.622

97.748

0.446

Multiple sequence alignment